SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene15363

Length: 261 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene15363
TGCCCTTCCATCCTTTTCAGGTATTCGTTGAATGATCGAGGTTTTCGATTTGGGTTCCATGGAGGACAAAGGATTCGTTGAGCAGAAGCGAAGGCTGAAAACCCCATCTCAGGTGGAGGCCCTGGAGAACATCTATGCAGAGCACAAATATCCCACGGAATCGATGAAAGCTAAGCTCTCCAGGGAGTTGGGATTGTCGGAGAAGCAGGTCCAGCGCTGGTTTCGGCACAGGAGGCTTAAGGACAAGAAGGGTAAGAAGTG

Ace file of the UniGene biog2_v2.0_unigene15363 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2392	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative DNA-binding protein [Arabidopsis thaliana] emb\|CAB77810.1\| putative DNA-binding protein [Arabidopsis thaliana] emb\|CAD29664.1\| homeodomain protein 14 [Arabidopsis thaliana] gb\|ABH04479.1\| At4g03250 [Arabidopsis thaliana]	-	-	5.0e-12	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Blast2go	homeobox-leucine zipper family protein	-	-	0.0	69%

Source	GOs	Term	Type	Identity
Blast2go	response to salt stress	GO:0009651	Biological Process	69%
Blast2go	leaf morphogenesis	GO:0009965	Biological Process	69%
Blast2go	response to blue light	GO:0009637	Biological Process	69%
Blast2go	positive regulation of transcription, DNA-dependent	GO:0045893	Biological Process	69%
Blast2go	sequence-specific DNA binding	GO:0043565	Molecular Function	69%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	69%
Blast2go	protein homodimerization activity	GO:0042803	Molecular Function	69%
Blast2go	nucleus	GO:0005634	Cellular Component	69%

Source	InterPros	Term	Type	Identity
Sma3	Homeodomain	IPR001356	-	-
Sma3		IPR012287	-	-
Sma3	Small acid-soluble spore protein, alpha/beta-type, conserved site	IPR018126	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABF4

Fln msg: Distance to subject end: 294 aas, your sequence is shorter than subject: 76 - 371

Fln protein: MIEVFDLGSMEDKGFVEQKRRLKTPSQVEALENIYAEHKYPTESMKAKLSRELGLSEKQVQRWFRHRRLKDKKGKK

Protein Length: 77

Fln nts: TGCCCTTCCATCCTTTTCAGGTATTCGTTGA_-_ATGATCGAGGTTTTCGATTTGGGTTCCATGGAGGACAAAGGATTCGTTGAGCAGAAGCGAAGGCTGAAAACCCCATCTCAGGTGGAGGCCCTGGAGAACATCTATGCAGAGCACAAATATCCCACGGAATCGATGAAAGCTAAGCTCTCCAGGGAGTTGGGATTGTCGGAGAAGCAGGTCCAGCGCTGGTTTCGGCACAGGAGGCTTAAGGACAAGAAGGGTAAGAAGTG

Fln Alignment:

biogeco2_mira_c12750___MIEVFDLGSMEDKGFVEQKRRLKTPSQVEALENIYAEHKYPTESMKAKLSRELGLSEKQVQRWFRHRRLKDKKGKK
D5ABF4__________________MIEVFDLGFMEDKGFVEQKRRLKTPSQVEALENIYAEHKYPTESMKGKLSRELGLSEKQVQRWFRHRRLKDKKGKK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain