SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene15358

Length: 230 nt

UniGene Fasta

>biog2_v2.0_unigene15358
GAGGTGTGCTTTCCATCAATATTACAGGGCCACCCTATGTGCGCACATATGCTCATTGTGCAAAGAATGATACTGGAATAACTTTACTCTTGGTCAACCTCAGCAACGACACAAAAGTTGATATTCTTGTTTCTGCTTATCCAAATTCTACCATGTACAAGAGAAGACCGAATGCAAAAGAGTCTTTTATACATAAGATTAAGAGATTCGTAGCCTGGGCTGGAATCAAA

Ace file of the UniGene biog2_v2.0_unigene15358

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11879	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Heparanase-like protein 2 n=4 Tax=Andropogoneae RepID=B6SRR5_MAIZE	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	55%
Blast2go	heparanase-like protein 1-like	-	-	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	71%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	0.0	71%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 79	IPR005199	-	-
Sma3	Nodulin-like	IPR010658	-	-
Sma3	Calmodulin-binding domain, plant	IPR012417	-	-
Sma3	Peptidase S1/S6, chymotrypsin/Hap, active site	IPR018114	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LM26

Fln msg: Distance to subject end: 47 aas, your sequence is shorter than subject: 76 - 381

Fln protein: GVLSINITGPPYVRTYAHCAKNDTGITLLLVNLSNDTKVDILVSAYPNSTMYKRRPNAKESFIHKIKRFVAWAGIK

Protein Length: 77

Fln nts: GAGGTGTGCTTTCCATCAATATTACAGGGCCACCCTATGTGCGCACATATGCTCATTGTGCAAAGAATGATACTGGAATAACTTTACTCTTGGTCAACCTCAGCAACGACACAAAAGTTGATATTCTTGTTTCTGCTTATCCAAATTCTACCATGTACAAGAGAAGACCGAATGCAAAAGAGTCTTTTATACATAAGATTAAGAGATTCGTAGCCTGGGCTGGAATCAAA

Fln Alignment:

biogeco2_mira_c12742___VLSINITGPPYVRTYAHCAKNDTGITLLLVNLSNDTKVDILVS
B8LM26__________________VLATNSTGTEYLRAYAHCTKSSRGVTLLLINLSRDTGISVQVS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain