SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene15340

Length: 241 nt

UniGene Fasta

>biog2_v2.0_unigene15340
AGATACATCTCAATTGGGTAGGGGCGCCCTGCTTACAGCTGGTGGGATTGCTGGTGCGGCTTTCTGGTTATTTGTATACCCAACTGATGTTGTTAAGAGTGTTATCCAAGTTGATGACTTCCGCCAACCAAAGTATTCTGGGACAATCGATGCATTCAGGAAACTTGCTTCTTCAGAAGGGGTTAAGGGCTTGTACAAAGGATTTGGGCCTGCCATGGCTAGAAGTGTTCCTGCCAATGCG

Ace file of the UniGene biog2_v2.0_unigene15340

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16914	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	mitochondrial carnitine/acylcarnitine carrier-like protein [Arabidopsis thaliana] sp\|Q93XM7.1\|MCAT_ARATH RecName: Full=Mitochondrial carnitine/acylcarnitine carrier-like protein; AltName: Full=Carnitine/acylcarnitine translocase-like protein; Short=CAC-li	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	protein	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	mitochondrial transport	GO:0006839	Biological Process	85%
Blast2go	ornithine transport	GO:0015822	Biological Process	85%
Blast2go	chloroplast	GO:0009507	Cellular Component	85%
Blast2go	mitochondrion	GO:0005739	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Sma3	Mitochondrial carrier protein	IPR002067	-	-
Sma3		IPR001993	-	-
Sma3	Mitochondrial substrate/solute carrier	IPR018108	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPX0

Fln msg: STOP codon was not found. Distance to subject end: 14 aas, your sequence is shorter than subject: 80 - 308

Fln protein: DTSQLGRGALLTAGGIAGAAFWLFVYPTDVVKSVIQVDDFRQPKYSGTIDAFRKLASSEGVKGLYKGFGPAMARSVPANA

Protein Length: 81

Fln nts: AGATACATCTCAATTGGGTAGGGGCGCCCTGCTTACAGCTGGTGGGATTGCTGGTGCGGCTTTCTGGTTATTTGTATACCCAACTGATGTTGTTAAGAGTGTTATCCAAGTTGATGACTTCCGCCAACCAAAGTATTCTGGGACAATCGATGCATTCAGGAAACTTGCTTCTTCAGAAGGGGTTAAGGGCTTGTACAAAGGATTTGGGCCTGCCATGGCTAGAAGTGTTCCTGCCAATGCG

Fln Alignment:

biogeco2_mira_c12721___DTSQXXXXXXXXXXXXXXXXFWLFVYPTDVVKSVIQVDDFRQPKYSGTIDAFRKLASSEGVKGLYKGFGPAMARSVPANA
B8LPX0__________________DTSQLGRGALLTSGGIAGAAFWLFVYPTDVVKSVIQVDDFRQPKYSGTIDAFRKIAASEGVKGLYKGFGPAMVRSVPANA

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain