SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene15322

Length: 352 nt

UniGene Fasta

>biog2_v2.0_unigene15322
AGTGGCAGATCCTCCATATTTGAGTGAAGAATGTCTCGTGAAGGTCTCTAAAACGATGATGCTTCTTGCAAAGGAAATAATGCCTTTTTCCTTTTATTAACAGGGAAAGTTCGGCAGGAACTTGCAGCAAAACATTTGAATGCACGCCCATGTGGATTCCAGCCTACACATCATCACAAGTTGGGCAATGAGTTTATGCTATTCACAAACTATGATCCGGAGGAGAGGCTTGGTGGGTGGGCTGAATTCAATTAAAATTTGTTTAAAGAGAAACTTTCTTTGTTTGATCCAGTTGCAAAAACAGGAGTAGCATTCGCGATTTCTCTATAGAGCTTGGAATTACACTGGGCTT

Ace file of the UniGene biog2_v2.0_unigene15322

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene975	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	nucleic acid binding / methyltransferase [Arabidopsis thaliana] gb\|AAL25534.1\| AT3g58470/F14P22_60 [Arabidopsis thaliana] gb\|AAM91470.1\| AT3g58470/F14P22_60 [Arabidopsis thaliana] gb\|AEE79786.1\| nucleic acid binding / methyltransferase [Arabidopsis thalia	-	-	2.0e-29	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%
Blast2go	n -adenine-specific dna methyltransferase 2-like	-	-	0.0	72%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring one-carbon groups, Methyltransferases.	EC:2.1.1.-	-	0.0	72%

Source	KEGGs	Term	Identity
Blast2go	Ubiquinone and other terpenoid-quinone biosynthesis	00130	72%
Blast2go	Tetracycline biosynthesis	00253	72%
Blast2go	Histidine metabolism	00340	72%
Blast2go	Tyrosine metabolism	00350	72%
Blast2go	Phenylalanine metabolism	00360	72%
Blast2go	Tryptophan metabolism	00380	72%
Blast2go	Benzoxazinoid biosynthesis	00402	72%
Blast2go	Selenocompound metabolism	00450	72%
Blast2go	Biosynthesis of 12-, 14- and 16-membered macrolides	00522	72%
Blast2go	Polycyclic aromatic hydrocarbon degradation	00624	72%
Blast2go	Methane metabolism	00680	72%
Blast2go	Porphyrin and chlorophyll metabolism	00860	72%
Blast2go	Carotenoid biosynthesis	00906	72%
Blast2go	Phenylpropanoid biosynthesis	00940	72%
Blast2go	Flavonoid biosynthesis	00941	72%
Blast2go	Anthocyanin biosynthesis	00942	72%
Blast2go	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945	72%
Blast2go	Isoquinoline alkaloid biosynthesis	00950	72%
Blast2go	Insect hormone biosynthesis	00981	72%
Blast2go	Biosynthesis of type II polyketide products	01057	72%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	72%
Blast2go	Metabolic pathways	01100	72%
Blast2go	Biosynthesis of secondary metabolites	01110	72%

Source	GOs	Term	Type	Identity
Blast2go	methylation	GO:0032259	Biological Process	72%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	72%
Blast2go	methyltransferase activity	GO:0008168	Molecular Function	72%

Source	InterPros	Term	Type	e value	Identity
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LMG3

Fln msg: Overlapping hits, possible frame ERROR between 124 and 79, your sequence is shorter than subject: 85 - 249

Fln protein: VADPPYLSEECLVKVSKTMMLLAKExxxxxxxxxxxxxxxxxAKHLNARPCGFQPTHHHKLGNEFMLFTNYDPEERLGGWAEFN*

Protein Length: 86

Fln nts: AGTGGCAGATCCTCCATATTTGAGTGAAGAATGTCTCGTGAAGGTCTCTAAAACGATGATGCTTCTTGCAAAGGAAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGCAAAACATTTGAATGCACGCCCATGTGGATTCCAGCCTACACATCATCACAAGTTGGGCAATGAGTTTATGCTATTCACAAACTATGATCCGGAGGAGAGGCTTGGTGGGTGGGCTGAATTCAATTAAAATTTGTTTAAAGAGAAACTTTCTTTGTTTGATCCAGTTGCAAAAACAGGAGTAGCATTCGCGATTTCTCTATAGAGCTTGGAATTACACTGGGCTT

Fln Alignment:

biogeco2_mira_c12697___VADPPYLSEECLVKVSKTMMLLAKEIxxxxxxxxxxxxxxxAAKHLNARPCGFQPTHHHKLGNEFMLFTNYDPEERLGGWAEFN
B8LMG3__________________VADPPYLSEECLVKVTETMMLLANQKxxxxxxxxxxxxxxxAAKLLNARPCGFQPTHHHKLGNEFMLFTNYDPEERLGGWVNFS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain