SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene15311

Length: 528 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene15311
AAAGCATGCCTCGGAACAAGCTCAAACACTGGGAATTGGAGTACGTGAGGCTGCCACACGTGTATTTCAAATGCCTCTGGATCCTACTCATCTAATGTCAATTTAGCAGTTGAAAATTCTTCTTGGAATGATGAAAAACAGCTCCAGGATATGTATGTTAGCAGGAAATCCTTTGCCTTGATTCTGATGCACCAGGGGCAGGCATGAAGGAGAACAAGCAAGTATTTGAAATGGCTTTATCAACAGCAGAGGCCACTTTCCAGAACCTTGATTCATCTGAGATATCTCTTACAGATGTGAGCCATTACTTTGACTCAGACCCAACAAACCTTGTACAGAACTTAAGAAAAGACAAGAAAAAGCCAAACGCATATATTGCAGACACCACTACTGCAAATGCACAGGTCAGGACTCTGTCTGAGACAGTCAGGCTAGATGCCAGGACAAAGCTACTTAATCCTAAATGGTATGAAGGAATGCTTTCTAGCGGATATGAAGGTGTTAGGGAGATTGAGAAGAGACTGACAA

Ace file of the UniGene biog2_v2.0_unigene15311 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene26981	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	magnesium chelatase subunit [Glycine max]	-	-	85%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	68%
Blast2go	magnesium chelatase h subunit	-	-	91%

Source	GOs	Term	Type	Identity
Blast2go	ligase activity	GO:0016874	Molecular Function	91%
Blast2go	chloroplast	GO:0009507	Cellular Component	91%
Blast2go	mitochondrion	GO:0005739	Cellular Component	91%

Source	InterPros	Term	Type	Identity
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Exoribonuclease, phosphorolytic domain 1	IPR001247	-	-
Sma3	CobN/magnesium chelatase	IPR003672	-	-
Sma3	Magnesium-chelatase, subunit H	IPR011771	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9H9U7

Fln msg: Overlapping hits, possible frame ERROR between 67 and 67, and possible frame ERROR between 177 and 180, Distance to subject end: 84 aas, your sequence is shorter than subject: 176 - 1364

Fln protein: KHASEQAQTLGIGVREAATRVxxNASGSYSSNVNLAVENSSWNDEKQLQDMYVSRKSFxxDSDAPGAGMKENKQVFEMALSTAEATFQNLDSSEISLTDVSHYFDSDPTNLVQNLRKDKKKPNAYIADTTTANAQVRTLSETVRLDARTKLLNPKWYEGMLSSGYEGVREIEKRLT

Protein Length: 177

Fln nts: AAAGCATGCCTCGGAACAAGCTCAAACACTGGGAATTGGAGTACGTGAGGCTGCCACACGTGTAxxxxxxAATGCCTCTGGATCCTACTCATCTAATGTCAATTTAGCAGTTGAAAATTCTTCTTGGAATGATGAAAAACAGCTCCAGGATATGTATGTTAGCAGGAAATCCTTTGxxxTTGATTCTGATGCACCAGGGGCAGGCATGAAGGAGAACAAGCAAGTATTTGAAATGGCTTTATCAACAGCAGAGGCCACTTTCCAGAACCTTGATTCATCTGAGATATCTCTTACAGATGTGAGCCATTACTTTGACTCAGACCCAACAAACCTTGTACAGAACTTAAGAAAAGACAAGAAAAAGCCAAACGCATATATTGCAGACACCACTACTGCAAATGCACAGGTCAGGACTCTGTCTGAGACAGTCAGGCTAGATGCCAGGACAAAGCTACTTAATCCTAAATGGTATGAAGGAATGCTTTCTAGCGGATATGAAGGTGTTAGGGAGATTGAGAAGAGACTGACAA

Fln Alignment:

biogeco2_mira_c12685___KHASEQAQTLGIGVREAATRVFSNASGSYSSNVNLAVENSSWNDEKQLQDMYVSRKSFAxDSDAPGAGMKENKQVFEMALSTAEATFQNLDSSEISLTDVSHYFDSDPTNLVQNLRKDKKKPNAYIADTTTANAQVRTLSETVRLDARTKLLNPKWYEGMLSSGYEGVREIEKRLT
B9H9U7__________________KHALEQAEALGVDIREAATRIFSNASGSYSSNINLAVENSSWNDEKQLQDMYLSRKSFAxDCDAPGAGMAEKRKVFEMALSTAEATFQNLDSSEISLTDVSHYFDSDPTNLVQNLRKDKKKPNAYIADTTTANAQVRTLSETVRLDARTKLLNPKWYEGMLSTGYEGVREIEKRLT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain