SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene15294

Length: 361 nt

UniGene Fasta

>biog2_v2.0_unigene15294
TCTAGAGAGTTCCGGGGCGTGTTGCATTGTGATGCCCTGCCATGTTTCGCACGCATGGTACGAAGAGCTCTCGCGGGGCTGTTCTGTTCCTTTCTGCATATCGGTGACTGCGTGGCGAGAGAGCTTAAGGAAGCGAACTTGAAACCCATTGAAACAGGAAGCAATGTGAAGATAGGGCTTCTTGGTACTGAGGCGACCTTGAGTGCGGGGTTTTATCAAGACAGGCTTAGCAACCAGGGTTTTGAGGTGGTTTTGCCTGACCATGCAACCATGGAGCACATAGTTGTGCCAGCTATTTGGGCACTGCAAAGTAACGACATTGAAGGAGCCAGGATTCTGTTGAGAATTGCATTACAGATTC

Ace file of the UniGene biog2_v2.0_unigene15294

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1889	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Racemase and epimerase, acting on amino acids and derivatives, putative n=1 Tax=Ricinus communis RepID=B9RV29_RICCO	-	-	48%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	38%
Blast2go	racemase and acting on amino acids and	-	-	71%

Source	ECs	Term	Type	e value	Identity
Blast2go	Isomerases, Racemases and epimerases, Acting on amino acids and derivatives.	EC:5.1.1.-	-	0.0	71%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	71%
Blast2go	iron ion binding	GO:0005506	Molecular Function	71%
Blast2go	racemase and epimerase activity, acting on amino acids and derivatives	GO:0016855	Molecular Function	71%
Blast2go	chloroplast	GO:0009507	Cellular Component	71%

Source	InterPros	Term	Type	Identity
Sma3	Asp/Glu racemase	IPR001920	-	-
Sma3	Aspartate racemase	IPR004380	-	-
Sma3	Asp/Glu/hydantoin racemase	IPR015942	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9GWD2

Fln msg: Overlapping hits, possible frame ERROR between 229 and 22, Distance to subject end: 52 aas, your sequence is shorter than subject: 120 - 330

Fln protein: LESSGAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxNQGFEVVLPDHATMEHIVVPAIWALQSNDIEGARILLRIALQI

Protein Length: 121

Fln nts: TCTAGAGAGTTCCGGGGCGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAACCAGGGTTTTGAGGTGGTTTTGCCTGACCATGCAACCATGGAGCACATAGTTGTGCCAGCTATTTGGGCACTGCAAAGTAACGACATTGAAGGAGCCAGGATTCTGTTGAGAATTGCATTACAGATTC

Fln Alignment:

biogeco2_mira_c12664___LESSGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSNQGFEVVLPDHATMEHIVVPAIWALQSNDIEGARILLRIALQI
B9GWD2__________________LEKSGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQNEGFEVVLPDKATMEHTIIPAIEALDRNDMEGAQNLLRIALQV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain