SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene15258

Length: 1007 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene15258

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15913	24/26

Source	Descriptions	Term	Type	Identity
AutoFact	Chlorophyll a-b binding protein type 2 member 1A, chloroplastic n=37 Tax=Spermatophyta RepID=CB2A_PINSY	-	-	90%
FL-Next	tr=Chlorophyll a/b binding protein; Pinus contorta (Shore pine) (Lodgepole pine).	-	-	99%
Blast2go	chloroplast light harvesting chlorophyll a b binding partial	-	-	97%

Source	InterPros	Term	Type	e value	Identity
Sma3	Chlorophyll A-B binding protein, plant	IPR001344	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q93XK4

Fln msg:

Fln protein: MASCGIGSCAFAGGQISSLKPHTNQLLGVGAGVHGEARVTMRKAATKKVSVSASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK*

Protein Length: 276

Fln nts: AGAAGAGAACTGGTACAAACTAAACTAATCTTCCGTTTGTGCGCCTACTGCTGCAACA_-_ATGGCAAGCTGCGGGATCGGGTCGTGCGCTTTCGCTGGGGGACAGATATCATCGCTGAAGCCTCACACCAACCAGTTGCTGGGAGTCGGCGCCGGGGTTCATGGCGAGGCGCGAGTGACGATGAGGAAGGCGGCCACCAAAAAGGTGTCAGTTTCAGCGAGCACATCGCCATGGTATGGGCCGGACCGGGTACTCTACTTGGGGCCTTTTTCCGGAGAGCCACCATCCTACTTGACCGGTGAGTTCCCCGGTGACTACGGGTGGGACACCGCGGGGCTTTCGGCAGATCCAGAGACTTTTGCGAAGAACAGAGAGCTGGAAGTGATCCACTGCCGGTGGGCAATGCTGGGCGCTCTGGGTTGCGTTTTCCCGGAGCTTCTGGCGAGAAATGGAGTAAAGTTCGGTGAGGCCGTGTGGTTCAAGGCGGGAGCTCAGATTTTCAGCGAGGGAGGGCTTGACTACCTGGGAAACCCTAGCTTGGTTCACGCGCAGAGCATTCTTGCAATCTGGGCATGCCAGGTCATCCTCATGGGCGCCGTGGAGGGATACCGTATTGCGGGCGGTCCTCTGGGAGAGGTGACCGACCCCATCTACCCCGGGGGCAGCTTCGACCCGCTGGGACTTGCGGACGACCCTGACGCTTTCGCGGAGCTGAAGGTGAAGGAGATCAAGAACGGGCGGTTGGCCATGTTTTCTATGTTCGGATTCTTCGTGCAGGCCATTGTCACCGGGAAAGGACCCATCGAGAACCTCGCTGATCACCTGGCTGACCCCGTTAACAACAACGCCTGGGCATACGCCACCAACTTCGTCCCCGGCAAATGA___AATCCGCCACTAGCACAAGTATGATGCTCTGCGATCATCTTTTGAGCCGGCCGGGGGCCGGGCCTGGCTTATTCTTGTCTATTCTGTTTGTCCTTCCTGTGTTTTAATGCAACGAATATTTTGT

Fln Alignment:

biogeco2_mira_c12619___MASCGIGSCAFAGGQISSLKPHTNQLLGVGAGVHGEARVTMRKAATKKVSVSASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK
Q93XK4__________________MASCGIGSCAFAGGQISSLKPHTNQLLGVGAGVHGEARVTMRKAATKKVSVSASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVSNNAWAYATNFVPGK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain