SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene15255

Length: 295 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene15255
GAGCCTGCTTTCCGAAGATATCCACTGGAGGAAGCCATGGCAAAGGATACTTTGGAGCGGGCCACAGAACCAAACCTTAATCTCAAAGGATACCTAACTAATTCGTACTTGCACCCTATCTTTAAGAGTGAAGAGAACGAGGAGAATGAAATGGGAGAATGGAGAGACGATGATAGTTTGGTACTGACAAAGCGTCATTCAAAACTGAACACCCCTGGAGCTAGTGAGAACAGCTACATTGCCTCACCAGAGTATGATGAGGAGACCTATAACTACCAAGTCTGATTATGCTTTC

Ace file of the UniGene biog2_v2.0_unigene15255 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene674	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	DUF221 domain containing protein	-	-	38%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	57%
Blast2go	protein	-	-	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	membrane	GO:0016020	Cellular Component	0.0	82%

Source	InterPros	Term	Type	Identity
Sma3	Ribosome-binding factor A	IPR000238	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Domain of unknown function DUF221	IPR003864	-	-
Sma3	WWE domain	IPR004170	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: E0CVN9

Fln msg: your sequence is shorter than subject: 95 - 771

Fln protein: EPAFRRYPLEEAMAKDTLERATEPNLNLKGYLTNSYLHPIFKSEENEENEMGEWRDDDSLVLTKRHSKLNTPGASENSYIASPEYDEETYNYQV*

Protein Length: 96

Fln nts: GAGCCTGCTTTCCGAAGATATCCACTGGAGGAAGCCATGGCAAAGGATACTTTGGAGCGGGCCACAGAACCAAACCTTAATCTCAAAGGATACCTAACTAATTCGTACTTGCACCCTATCTTTAAGAGTGAAGAGAACGAGGAGAATGAAATGGGAGAATGGAGAGACGATGATAGTTTGGTACTGACAAAGCGTCATTCAAAACTGAACACCCCTGGAGCTAGTGAGAACAGCTACATTGCCTCACCAGAGTATGATGAGGAGACCTATAACTACCAAGTCTGA___TTATGCTTTC

Fln Alignment:

biogeco2_mira_c12616___EPAFRRYPLEEAMAKDTLERATEPNLNLKGYLTNSYLHPIFKS--XXXXXXEMGEWRDDDSLVLTKRHSKLNTPGASENSYIASPEYDE
E0CVN9__________________EPAFIRYPLQEAKMKDTLERAREPHLNLKGYLQTAYIHPVFKSAEDDEEEEIHGKWEHDAELVPTKRQSRRNTPLPSKFSGSSSPSLPE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain