SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene15171

Length: 138 nt

UniGene Fasta

>biog2_v2.0_unigene15171
CTTGTCGGCTCCGCTCTCAATGCTTCTGCCGTGGACTTAACCATGCTTATTAGCGGCGTGTAATGCTTGGAGTAGGAATCGGCTTTGCAAATCAGGCTGTACCTCTGTACCTCTCAGAGCTGGCACATCCGGAAACCC

Ace file of the UniGene biog2_v2.0_unigene15171

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4519	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Sugar carrier protein A n=6 Tax=Andropogoneae RepID=B6TMZ9_MAIZE	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	hexose transporter	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	2-alkenal reductase.	EC:1.3.1.74	-	0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	82%
Blast2go	carbohydrate transport	GO:0008643	Biological Process	82%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	82%
Blast2go	sugar:hydrogen symporter activity	GO:0005351	Molecular Function	82%
Blast2go	2-alkenal reductase [NAD(P)] activity	GO:0032440	Molecular Function	82%
Blast2go	plasma membrane	GO:0005886	Cellular Component	82%
Blast2go	integral to membrane	GO:0016021	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Sugar/inositol transporter	IPR003663	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQ43

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 57 and 57, Distance to subject end: 346 aas, your sequence is shorter than subject: 46 - 517

Fln protein: LVGSALNASAVDLTMLISxxVMLGVGIGFANQAVPLYLSELAHPET

Protein Length: 47

Fln nts: CTTGTCGGCTCCGCTCTCAATGCTTCTGCCGTGGACTTAACCATGCTTATTAGCxxxxxxGTAATGCTTGGAGTAGGAATCGGCTTTGCAAATCAGGCTGTACCTCTGTACCTCTCAGAGCTGGCACATCCGGAAACCC

Fln Alignment:

biogeco2_mira_c12517___LVGSALNASAVDLTMLISGRVMLGVGIGFANQAVPLYLSELAHPET
B8LQ43__________________LVGSALNAVAKNLTMLISGRVMLGVGIGFANQAVPLYLSELAPPQT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain