SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene15169

Length: 387 nt

UniGene Fasta

>biog2_v2.0_unigene15169
TTTGGGTGGCTCAATACATGCATGTTTTTCTGGGCATATTGCTTCAAATGTGGAGCTGGATTGATTAACGCATTCTTGGCAGCTATATGTATGGTGATTGTCTCTGGAATGTCTGCATTTCATCTTTTCAGACTATATGGCGGAAAACAGACAAGTGTTCTGTGAACACTAGATAAACTGCTCAAAACCTATTTAATGGGTTATAAAATGCTTACTCTAATTGTATGATAAATTGCTTAAATAGCCCACCCACAGTTTCCTGTACCTATTGACCTGATACCTTATAAAATCAGGCCTTAGTATTTTGGACAATCATATGTTTTATCTATAATTTATAAATTTATTAAGATCTATAAGTCAAAATCTTAAAAGGCAGTAGAGTTGGTC

Ace file of the UniGene biog2_v2.0_unigene15169

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9957	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	UPF0497 membrane protein 5 n=1 Tax=Picea sitchensis RepID=U4975_PICSI	-	-	9.80909e-45	49%
FL-Next	sp=CASP-like protein 4; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%
Blast2go	integral membrane family protein	-	-	0.0	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	integral to membrane	GO:0016021	Cellular Component	0.0	67%

Source	InterPros	Term	Type	e value	Identity
Sma3	Uncharacterised protein family UPF0497, trans-membrane plant subgroup	IPR006459	-	0.0	-
Sma3	Uncharacterised protein family UPF0497, trans-membrane plant	IPR006702	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A8E6

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 20 aas, your sequence is shorter than subject: 55 - 226

Fln protein: FGWLNTCMFFWAYCFKCGAGLINAFLAAICMVIVSGMSAFHLFRLYGGKQTSVL*

Protein Length: 56

Fln nts: TTTGGGTGGCTCAATACATGCATGTTTTTCTGGGCATATTGCTTCAAATGTGGAGCTGGATTGATTAACGCATTCTTGGCAGCTATATGTATGGTGATTGTCTCTGGAATGTCTGCATTTCATCTTTTCAGACTATATGGCGGAAAACAGACAAGTGTTCTGTGA___ACACTAGATAAACTGCTCAAAACCTATTTAATGGGTTATAAAATGCTTACTCTAATTGTATGATAAATTGCTTAAATAGCCCACCCACAGTTTCCTGTACCTATTGACCTGATACCTTATAAAATCAGGCCTTAGTATTTTGGACAATCATATGTTTTATCTATAATTTATAAATTTATTAAGATCTATAAGTCAAAATCTTAAAAGGCAGTAGAGTTGGTC

Fln Alignment:

biogeco2_mira_c12515___WLNTCMFFWAYCFKCGAGLINAFLAAICMVIVSGMSAFHLFRLYGGKQ
D5A8E6__________________WIKVCMFFRAYCFKSGAGMINAFLAALCMVFVSGMSVFHLFRLYGEKR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain