SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene15168

Length: 1022 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene15168 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4390	7/47
SustainPine v2.0	sp_v2.0_unigene60292	40/47

Source	Descriptions	Term	Type	Identity
AutoFact	Ras-related protein RIC1 n=7 Tax=commelinids RepID=RIC1_ORYSJ	-	-	91%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	rab family gtpase	-	-	95%

Source	GOs	Term	Type	e value	Identity
Blast2go	trans-Golgi network membrane	GO:0032588	Cellular Component	0.0	95%

Source	InterPros	Term	Type	Identity
Sma3	Small GTPase superfamily, Rab type	IPR003579	-	-
Sma3		IPR013753	-	-
Sma3	Small GTPase superfamily	IPR001806	-	-
Sma3	RNA polymerase sigma factor 54, interaction	IPR002078	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-

Full-Lengther Next Prediction

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
32	75		25		0.996473
34	25		75		0.996473
35	75		25		0.996473
758	80		20		0.995493
897	83	16			0.994513
899		16	83		0.994513
900		16	83		0.994513
902		83		16	0.994516
1002	75	25			0.996473
1003	75	25			0.996473
1004		25	75		0.996474
1005	75	25			0.996474
1007	66			33	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
932	952	TCCGGAA TCCGGAA TCCGGAA	21

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain