SustainPineDB

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Assembly info
Unigenes
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SSRs
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GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene15137

Length: 316 nt

UniGene Fasta

>biog2_v2.0_unigene15137
GGTTGCAGCTTTCTTAGCATGACTGCTATTTCAGGCCTTCTTTATGTGATCATAGGTTCGGGCATAGCTTGTCTGGCTGGACTTCTTCTTGGTGTCGCATCTGCCATTTTTATCGCGGCTATTTTGGGGGCTACAATGCTGTGGATATATGGAAGCTTTTGGATAACAGGAGCATTGATTATAATAGGAGCAGGAAGTCTATTCACACTGAACCATGCACAGTTGGCAATTCTGATCACAACTATATACTCCATGTATTGTGCTAAAGTCCGTGGTGGATGGCTTGGTTTAATCCTTTGTGTGAACATGGCCTTTA

Ace file of the UniGene biog2_v2.0_unigene15137

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9996	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Heat shock protein DnaJ [Medicago truncatula]	-	-	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	47%
Blast2go	chaperone protein dnaj	-	-	58%

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3	Heat shock protein DnaJ	IPR003095	-	-
Sma3		IPR015609	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LR85

Fln msg: Distance to subject end: 386 aas, your sequence is shorter than subject: 105 - 770

Fln protein: GCSFLSMTAISGLLYVIIGSGIACLAGLLLGVASAIFIAAILGATMLWIYGSFWITGALIIIGAGSLFTLNHAQLAILITTIYSMYCAKVRGGWLGLILCVNMAF

Protein Length: 106

Fln nts: GGTTGCAGCTTTCTTAGCATGACTGCTATTTCAGGCCTTCTTTATGTGATCATAGGTTCGGGCATAGCTTGTCTGGCTGGACTTCTTCTTGGTGTCGCATCTGCCATTTTTATCGCGGCTATTTTGGGGGCTACAATGCTGTGGATATATGGAAGCTTTTGGATAACAGGAGCATTGATTATAATAGGAGCAGGAAGTCTATTCACACTGAACCATGCACAGTTGGCAATTCTGATCACAACTATATACTCCATGTATTGTGCTAAAGTCCGTGGTGGATGGCTTGGTTTAATCCTTTGTGTGAACATGGCCTTTA

Fln Alignment:

biogeco2_mira_c12477___CSFLSMTAISGLLYVIIGSGIACLAGLLLGVASAIFIAAILGATMLWIYGSFWITGALIIIGAGSLFTLNHAQLAILITTIYSMYCAKVRGGWLGLILCVNMAF
B8LR85__________________CSFLSFIAMAGIFNVLLSLGVACVMAFFFGYTASVLTTAVFGMVVLWMHGSFWMT-SLLIIAAGIAFALNHEHLALLITIMYSIYSAKFHVGWLGMVLCMNLAF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain