SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene15114

Length: 285 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene15114
ATGAAGTCTCTGAGTATGCTGTTGTTCCANCGGGGATTCTCNGAAAAATTGACACCAGTGTTGCTAAACCGTCCTATTATTTGGGACTTCTGGGGACGCCCGCTTTGACTGCATGGATTGGTTTCAAGATCATCGGAAACCCTAAGCCCGGGGATGAAGTATTTGTCACGGCAGCAGCAGGAGCAGTGGGAATGGTTGTTGGGCAACTCGCCAAAATCAAAGGCTGCCGCGTTGTTGGCAGCGCAGGTAGCGACCAGAAGGTGAAACTGCTGAAGGAAGAATTTG

Ace file of the UniGene biog2_v2.0_unigene15114 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene30380	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Phenylpropenal double-bond reductase n=1 Tax=Pinus taeda RepID=Q0PIN2_PINTA	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	phenylpropenal double-bond reductase	-	-	76%

Source	InterPros	Term	Type	Identity
Sma3	Alcohol dehydrogenase superfamily, zinc-type	IPR002085	-	-
Sma3	Alcohol dehydrogenase, C-terminal	IPR013149	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P0J4

Fln msg: Distance to subject end: 148 aas, your sequence is shorter than subject: 94 - 350

Fln protein: EVSEYAVVPAGIL*KIDTSVAKPSYYLGLLGTPALTAWIGFKIIGNPKPGDEVFVTAAAGAVGMVVGQLAKIKGCRVVGSAGSDQKVKLLKEEF

Protein Length: 95

Fln nts: ATGAAGTCTCTGAGTATGCTGTTGTTCCAgCGGGGATTCTCtGAAAAATTGACACCAGTGTTGCTAAACCGTCCTATTATTTGGGACTTCTGGGGACGCCCGCTTTGACTGCATGGATTGGTTTCAAGATCATCGGAAACCCTAAGCCCGGGGATGAAGTATTTGTCACGGCAGCAGCAGGAGCAGTGGGAATGGTTGTTGGGCAACTCGCCAAAATCAAAGGCTGCCGCGTTGTTGGCAGCGCAGGTAGCGACCAGAAGGTGAAACTGCTGAAGGAAGAATTTG

Fln Alignment:

biogeco2_mira_c12451___EVSEYAVVPAGIL*KIDTSVAKPSYYLGLLGTPALTAWIGFKIIGNPKPGDEXXXXXXXXXXXXXXXXXAKIKGCRVVGSAGSDQKVKLLKEEF
A9P0J4__________________QVSEYAVVPGGILRKIDATVAKPSDYLGLLGVPALTAWVGFTIIGNPNPGDEVFVSAAAGSVGMVVGQLAKIKGCRVVGSAGSDQKVKLLKEEF

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain