SustainPineDB

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Assembly info
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ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene15105

Length: 381 nt

UniGene Fasta

>biog2_v2.0_unigene15105
TTGGTGTGTATCCAGAGCAGGATCTCATTGTATATTTACCGGATGAATGCTTGGCCTCGATTTTCCAGAAGCTCACAAACGAAGATCGAAATGCTTGCTCCCTAGTCTGCAGTAGATGGCACCGCATTGAATCGAAAAGCAGGCAACGCCTAGTTCTCCATGCTCGAACTGGGCTTTCCTCCTTGCTTCCAGCCCTGATCACGAGATTTGAACATGTGACTGTTCTGGCTCTGAAATGCTCCAGAAAATTTCCCAGTATTGACAACAATGCACTTTCGTTAATTGGAAAGAGTTTCACTCGTCTCAAGAAGATCAAACTGAAGGGATGCATCGAGATTACTGATGAGGGTCTAGAGTCCTTCTCACTTGTATGTGGTCCTA

Ace file of the UniGene biog2_v2.0_unigene15105

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1261	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Cyclin-like F-box [Medicago truncatula]	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	f-box family protein	-	-	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	0.0	67%
Blast2go	cytoplasm	GO:0005737	Cellular Component	0.0	67%

Source	InterPros	Term	Type	e value	Identity
Sma3	F-box domain, cyclin-like	IPR001810	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUV1

Fln msg: Distance to subject end: 347 aas, your sequence is shorter than subject: 126 - 498

Fln protein: GVYPEQDLIVYLPDECLASIFQKLTNEDRNACSLVCSRWHRIESKSRQRLVLHARTGLSSLLPALITRFEHVTVLALKCSRKFPSIDNNALSLIGKSFTRLKKIKLKGCIEITDEGLESFSLVCGP

Protein Length: 127

Fln nts: TTGGTGTGTATCCAGAGCAGGATCTCATTGTATATTTACCGGATGAATGCTTGGCCTCGATTTTCCAGAAGCTCACAAACGAAGATCGAAATGCTTGCTCCCTAGTCTGCAGTAGATGGCACCGCATTGAATCGAAAAGCAGGCAACGCCTAGTTCTCCATGCTCGAACTGGGCTTTCCTCCTTGCTTCCAGCCCTGATCACGAGATTTGAACATGTGACTGTTCTGGCTCTGAAATGCTCCAGAAAATTTCCCAGTATTGACAACAATGCACTTTCGTTAATTGGAAAGAGTTTCACTCGTCTCAAGAAGATCAAACTGAAGGGATGCATCGAGATTACTGATGAGGGTCTAGAGTCCTTCTCACTTGTATGTGGTCCTA

Fln Alignment:

biogeco2_mira_c12440___VYPEQDLIVYLPDECLASIFQKLTNEDRNACSLVCSRWHRIESKSRQRLVLHARTGLSSLLPALITRFEHVTVLALKCSRKFPSIDNNALSLIGKSFTRLKKIKLKGCIEITDEGLESFSLVCGP
A9NUV1__________________VYPEQDLIVYLPDECLASIFQKLTNEDRNACSLVCSRWHRIESKSRQRLVLMARTELSSLLPALFMRFEHVTVLSLKCSRKFPSIDNKALSLIGKSFTHLKKIKLKGCIEITDEGLESFSLVCGP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain