SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene15069

Length: 381 nt

UniGene Fasta

>biog2_v2.0_unigene15069
AGGTGGAGCACAATTCTTGCTTTCAGTGGGCTGTAATGACATGGGTGGTTCTCTCATGAATGAGAGCATTACCCGAGCAGCAGGAGCATCACATGGACAGGAACTGCACCCAATCGAAATGGCGAGGATGATCCAGTCAATAGGCAGAATACCTCAGCAAAGGACAACTTTATATGAGAGTGTTTCGCATGACCAAGTAACGAAGTCTCTTTCATCTTGCCCGATGACCAGATGTTAGTAGACGCTTTTCTTATTAAGATGTTACTAGTTTGACAGAAATAACTAGTGTCACTGATGAGCAGCTTATTTATTCTTTATACTTAAATACTTACTGTATAACTACTATCCTAGTTTGATGTCGATACCGTGTCATATAATACA

Ace file of the UniGene biog2_v2.0_unigene15069

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3839	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	FO synthase [Azoarcus sp. EbN1] emb\|CAI10697.1\| hypothetical protein, similar to ThiH,4-methyl-5(beta-hydroxyethyl)thiazole phosphate synthesis [Aromatoleum aromaticum EbN1]	-	-	57%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	63%
Blast2go	fo synthase	-	-	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring alkyl or aryl groups, other than methyl groups, Transferring alkyl or aryl groups, other than methyl groups.	EC:2.5.1.-	-	0.0	77%

Source	KEGGs	Term	Identity
Blast2go	Ubiquinone and other terpenoid-quinone biosynthesis	00130	77%
Blast2go	Cysteine and methionine metabolism	00270	77%
Blast2go	Tryptophan metabolism	00380	77%
Blast2go	Porphyrin and chlorophyll metabolism	00860	77%
Blast2go	Terpenoid backbone biosynthesis	00900	77%
Blast2go	Carotenoid biosynthesis	00906	77%
Blast2go	Biosynthesis of terpenoids and steroids	01062	77%
Blast2go	Metabolic pathways	01100	77%
Blast2go	Biosynthesis of secondary metabolites	01110	77%

Source	GOs	Term	Type	Identity
Blast2go	coenzyme biosynthetic process	GO:0009108	Biological Process	77%
Blast2go	4 iron, 4 sulfur cluster binding	GO:0051539	Molecular Function	77%
Blast2go	transferase activity, transferring alkyl or aryl (other than methyl) groups	GO:0016765	Molecular Function	77%

Source	InterPros	Term	Type	Identity
Sma3	FO synthase, subunit 2-like	IPR005244	-	-
Sma3	Elongator protein 3/MiaB/NifB	IPR006638	-	-
Sma3	Radical SAM	IPR007197	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: A9SZ46

Fln msg: your sequence is shorter than subject: 79 - 976

Fln protein: GGAQFLLSVGCNDMGGSLMNESITRAAGASHGQELHPIEMARMIQSIGRIPQQRTTLYESVSHDQVTKSLSSCPMTRC*

Protein Length: 80

Fln nts: AGGTGGAGCACAATTCTTGCTTTCAGTGGGCTGTAATGACATGGGTGGTTCTCTCATGAATGAGAGCATTACCCGAGCAGCAGGAGCATCACATGGACAGGAACTGCACCCAATCGAAATGGCGAGGATGATCCAGTCAATAGGCAGAATACCTCAGCAAAGGACAACTTTATATGAGAGTGTTTCGCATGACCAAGTAACGAAGTCTCTTTCATCTTGCCCGATGACCAGATGTTAG___TAGACGCTTTTCTTATTAAGATGTTACTAGTTTGACAGAAATAACTAGTGTCACTGATGAGCAGCTTATTTATTCTTTATACTTAAATACTTACTGTATAACTACTATCCTAGTTTGATGTCGATACCGTGTCATATAATACA

Fln Alignment:

biogeco2_mira_c12395___GGAQFLLSVGCNDMGGSLMNESITRAAGASHGQELHPIEMARMIQSIGRIPQQRTTLYESVSHDQVTKSLSSCPMT
A9SZ46__________________GGAQALLAAGCNDMGGSLMNESITRAAGASHGEELSPKEMETLILSTGKVPYQRTTLYGDAPAQQRIRAFSARPLT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain