SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene15051

Length: 296 nt

UniGene Fasta

>biog2_v2.0_unigene15051
CATTAGTGCTATTTTTCGATTAGTGGAACCTGCAGGGGGTAGAATCCTTATAGATGGTTTGGATACTACCTCTATTGGGCTTCATGATTTGCGGTCGCGGCTTGGGATTATTCCTCAAGAACCAACTCTTTTTCGAGGAACTGTTCGCTTCAACTTGGATCCATTATCTGAGCACTCAGATTTGACAATTTGGGAAGTTCTGAACAAGTGTCAACTTGGAGACATTGTAAGAGGGAAGGTGGATGGCCTAGATGCACCAGTGGGGGACATGGAGAAAATTGGAGTGTAGGACAAAG

Ace file of the UniGene biog2_v2.0_unigene15051

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6330	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Multidrug resistance protein ABC transporter family (Fragment) n=2 Tax=Populus trichocarpa RepID=B9N9A1_POPTR	-	-	69%
FL-Next	tr=MDR-like ABC transporter; Taxus cuspidata (Japanese yew).	-	-	30%
Blast2go	multidrug resistance protein abc transporter family	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	2-alkenal reductase.	EC:1.3.1.74	-	0.0	83%

Source	GOs	Term	Type	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	83%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	83%
Blast2go	ATP catabolic process	GO:0006200	Biological Process	83%
Blast2go	ATPase activity, coupled to transmembrane movement of substances	GO:0042626	Molecular Function	83%
Blast2go	2-alkenal reductase [NAD(P)] activity	GO:0032440	Molecular Function	83%
Blast2go	ATP binding	GO:0005524	Molecular Function	83%
Blast2go	integral to membrane	GO:0016021	Cellular Component	83%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	Neuraxin/MAP1B repeat	IPR000102	-	-
Sma3	Aminotransferase, class V/Cysteine desulfurase	IPR000192	-	-
Sma3	Histidine phosphatase superfamily, clade-2	IPR000560	-	-
Sma3	Serine/threonine dehydratase, pyridoxal-phosphate-binding site	IPR000634	-	-
Sma3	ABC transporter, transmembrane domain	IPR001140	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	ABC transporter, integral membrane type 1	IPR017940	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3	Hemopexin/matrixin, conserved site	IPR018486	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: E6Y0T0

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 785 aas, your sequence is shorter than subject: 96 - 1316

Fln protein: ISAIFRLVEPAGGRILIDGLDTTSIGLHDLRSRLGIIPQEPTLFRGTVRFNLDPLSEHSDLTIWEVLNKCQLGDIVRGKVDGLDAPVGDMEKIGV*

Protein Length: 97

Fln nts: CATTAGTGCTATTTTTCGATTAGTGGAACCTGCAGGGGGTAGAATCCTTATAGATGGTTTGGATACTACCTCTATTGGGCTTCATGATTTGCGGTCGCGGCTTGGGATTATTCCTCAAGAACCAACTCTTTTTCGAGGAACTGTTCGCTTCAACTTGGATCCATTATCTGAGCACTCAGATTTGACAATTTGGGAAGTTCTGAACAAGTGTCAACTTGGAGACATTGTAAGAGGGAAGGTGGATGGCCTAGATGCACCAGTGGGGGACATGGAGAAAATTGGAGTGTAGGACAAAG

Fln Alignment:

biogeco2_mira_c12367___ISAIFRLVEPAGGRILIDGLDTTSIGLHDLRSRLGIIPQEPTLFRGTVRFNLDPLSEHSDLTIWEVLNKCQLGD---IVRGKVDGLDAPVGD
E6Y0T0__________________ISLVERFYDPQAGEVLIDGINIKKFQLKWIRQKIGLVSQEPVLFGTTIKENL--LYGKDGATLEEIKAAAELANAAKFINKLPQGFDTMVGE

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain