SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene15035

Length: 603 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene15035 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18852	4/6
SustainPine v2.0	sp_v2.0_unigene21961	2/6

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Arginine/serine-rich splicing factor RSP41, putative [Solanum demissum]	-	-	5.0e-27	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Blast2go	protein	-	-	5.60519e-45	91%

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Ribosomal RNA adenine methylase transferase	IPR001737	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Full-Lengther Next Prediction

SNPs (tot: 8)

Position	A %	C %	G %	Probability
299	50		50	1.0
345		25	75	0.996473
347	75	25		0.996473
348	25	75		0.996473
443	33	66		0.997471
488	66	33		0.997452
489	66	33		0.997452
490		33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain