SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene15032

Length: 464 nt

UniGene Fasta

>biog2_v2.0_unigene15032
CTGTTGTGTGCCACACCTTCATACTAATTCAAANAGGGTGCTCATCCCACTCCCAGTGCTTTGGATTTTCAAAGTGCCTTGAACTAATGGCACAAAATACCTATAGTATATCCCGTCACTGGTTTCTATGGTGTATGAATGGCACGGTTTGAACTTATTGTTCATGGCTGCAGGTTTCCAGACAAAGAAGCTGGCCAGGTTCCCATGGCATGGTTGTACAAAAACCAGGCAAAACACTATCCGAAACCAGTGTTATTGACTTTGTAGCTCAACAGGTAGCACCATACAAGAAAGTTCGCCGCGTAGCTTTTGTGAGTAAGATTCCAAAAACTGCAGCAGGAAAGATATTAAGGAAGGACTTAATTAAGTTGTCCACATCCAAACTTTGATGCAATTGTGGAATTATAAATTTCAATTGCCTGTTAGAAAATAAGTCTGCATCACAAATTTGTCTGAGCAATCAT

Ace file of the UniGene biog2_v2.0_unigene15032

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene66336	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	AMP dependent CoA ligase, putative n=1 Tax=Ricinus communis RepID=B9R8J7_RICCO	-	-	3.0e-23	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Blast2go	amp dependent	-	-	7.19255e-34	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	7.19255e-34	86%

Source	InterPros	Term	Type	e value	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	0.0	-
Sma3	AMP-dependent synthetase/ligase	IPR000873	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ADH9

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 129 - 303

Fln protein: VVCHTFILIQKGCSSHSQCFGFSKCLELMAQNTYSISRHWFLWCMNGTV*TYCSWLQVSRQRSWPGSHGMVVQKPGKTLSETSVIDFVAQQVAPYKKVRRVAFVSKIPKTAAGKILRKDLIKLSTSKL*

Protein Length: 130

Fln nts: CTGTTGTGTGCCACACCTTCATACTAATTCAAAaAGGGTGCTCATCCCACTCCCAGTGCTTTGGATTTTCAAAGTGCCTTGAACTAATGGCACAAAATACCTATAGTATATCCCGTCACTGGTTTCTATGGTGTATGAATGGCACGGTTTGAACTTATTGTTCATGGCTGCAGGTTTCCAGACAAAGAAGCTGGCCAGGTTCCCATGGCATGGTTGTACAAAAACCAGGCAAAACACTATCCGAAACCAGTGTTATTGACTTTGTAGCTCAACAGGTAGCACCATACAAGAAAGTTCGCCGCGTAGCTTTTGTGAGTAAGATTCCAAAAACTGCAGCAGGAAAGATATTAAGGAAGGACTTAATTAAGTTGTCCACATCCAAACTTTGA___TGCAATTGTGGAATTATAAATTTCAATTGCCTGTTAGAAAATAAGTCTGCATCACAAATTTGTCTGAGCAATCAT

Fln Alignment:

biogeco2_mira_c12341___VVQKPGKTLSETSVIDFVAQQVAPYKKVRRVAFVSKIPKTAAGKILRKDLIKLSTSKL
D5ADH9__________________IVQKPGNTLSEISVIDFVTQQVAPYKKIRRVAFVSKIPKTAAGKILRKDLIKLATSKL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain