SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene15010

Length: 526 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene15010
TCAGAAGGCCAGTACCAATGAGTCGTCTTCTAGCGGGTGATGTTGGTTGTGGAAAAACTATTGTAGCACTTTTGGCTGCTCTAGAGGTTATCGATTCAGGGTATCAGGTAGCATTTATGGTGCCAACAGAATTATTAGCAATGCAGCATCATGGGAACATTATTTCTATTCTAGAGAGGATAAACAAAGATGACAGGCCTTCAGTAGCTCTTTTAACTGGTTCCACTCCATTAAAGGAAGCTCGTTTAATACAGAAGGGATTGGAGATGGGAGATATTGCATTGGTAGTAGGCACACACAAATTGTTTTCAGAAACTGTGAATTTTGCCTCTCTTTGCTTTCAGTAATAGATGAACAACATCGCTTTGGAGTGGAGCAAAAGGGAAGGTTTAGTAGCAAGGCTTGCACAGTTATGAACAAGTCAGTTGCAAATGGCAATAAGTTAGAAGATAGGCAGTTGGTTGCAAATAAGACATTCTTTGCTCCACATGTTCTTGTCATGTCTGCCACTCCAATTCCTAGGACC

Ace file of the UniGene biog2_v2.0_unigene15010 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3374	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	ATP-dependent DNA helicase RecG [Synechococcus elongatus PCC 6301] ref\|YP_400096.1\| ATP-dependent DNA helicase RecG [Synechococcus elongatus PCC 7942] dbj\|BAD78660.1\| ATP-dependent DNA helicase RecG [Synechococcus elongatus PCC 6301] gb\|ABB57109.1\| ATP-de	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	atp-dependent dna helicase	-	-	72%

Source	GOs	Term	Type	Identity
Blast2go	DNA metabolic process	GO:0006259	Biological Process	72%
Blast2go	ATP-dependent helicase activity	GO:0008026	Molecular Function	72%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	72%
Blast2go	ATP binding	GO:0005524	Molecular Function	72%

Source	InterPros	Term	Type	Identity
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	DNA helicase, ATP-dependent, RecG	IPR004609	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AC88

Fln msg: Overlapping hits, possible frame ERROR between 341 and 260, Distance to subject end: 257 aas, your sequence is shorter than subject: 170 - 394

Fln protein: MSRLLAGDVGCGKTIVALLAALEVIDSGYQVAFMVPTELLAMQHHGNIISILERINKDDRPSVALLTGSTPLKEARLIQKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVIDEQHRFGVEQKGRFSSKACTVMNKSVANGNKLEDRQLVANKTFFAPHVLVMSATPIPRT

Protein Length: 171

Fln nts: TCAGAAGGCCAGTACCA_-_ATGAGTCGTCTTCTAGCGGGTGATGTTGGTTGTGGAAAAACTATTGTAGCACTTTTGGCTGCTCTAGAGGTTATCGATTCAGGGTATCAGGTAGCATTTATGGTGCCAACAGAATTATTAGCAATGCAGCATCATGGGAACATTATTTCTATTCTAGAGAGGATAAACAAAGATGACAGGCCTTCAGTAGCTCTTTTAACTGGTTCCACTCCATTAAAGGAAGCTCGTTTAATACAGAAGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGTAATAGATGAACAACATCGCTTTGGAGTGGAGCAAAAGGGAAGGTTTAGTAGCAAGGCTTGCACAGTTATGAACAAGTCAGTTGCAAATGGCAATAAGTTAGAAGATAGGCAGTTGGTTGCAAATAAGACATTCTTTGCTCCACATGTTCTTGTCATGTCTGCCACTCCAATTCCTAGGACC

Fln Alignment:

biogeco2_mira_c12314___MVPTELLAMQHHGNIISILERINKDDRPSVALLTGSTPLKEARLIQKGLExxxxxxxxxxxxxxxxxxxxxxxxxLLSVIDEQHRFGVEQKGRFSSKACTVMNKSVANGNKLEDRQLVANKTFFAPHVLVMSATPIPRT
D5AC88__________________MVPTELLATQHYENIISMLERINKDDRPSVAFLTGSTPLKETRLIRKGLExxxxxxxxxxxxxxxxxxxxxxxxxCFAVIDEQHRFGVEQKGRFSSKACTVMDKSGANGIKLEDGQLVANKTFFAPHVLVMSATPIPRT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain