SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene14992

Length: 2675 nt

UniGene Fasta

>biog2_v2.0_unigene14992
ATGGGGATACTCTCCTTCAATCCTTTGAAGGAACAGCAGGAATCTATCTGTTTACTAACGGAATCTCTGCTGGTCTCCGTCTCTGTCTCTGGTTTGCAGCACCTTTTCTTCGAAGGGAAGTTAGGACTTTTCAAGCCCGAAAGCAATGGCTTCCCACGTTGTTGGATACCCTCGCATGGGCCCGAAGAGAGAGCTCAAGTTCGCTTTGGAGTCCTTCTGGGATGGCAAAACATCTGCTGCGGCCCTCGAGACTGTGGCTAAGGAACTGAGGTCTTCGATCTGGAAGCAGATGGTAGCTGCCGGAGTCAAATTGATTCCCAGCAACACTTTCTCGTACTACGATCAAGTTCTGGACACCACTGCCATGCTTGGAGCTGTTCCTCCTAGGTATGGCTTCGCTGGCGGTGAGATTGGATTCGACACTTACTTTTCCATGGCCCGAGGAAACGCCACACTCCCTGCAATGGAGATGACCAAGTGGTTTGACACCAACTATCACTACATCGTTCCAGAGTTGGGCCCGGAGATCAAATTTGCTTACTCATCACACAAGGCAGTAGCAGAATACAAGGAGGCTAAAGAGCTGGGCATTGATACTGTGCCCGTGATTGTAGGACCCGTGTCATACTTGCTATTGTCTAAGCCCGCAAAAGGCGTGGCAAAGACCTTCAATCTTCTTACTCTTCTTGATTCAATCCTTCCAATTTACAAGCAAGTTGTGTCTGAGTTGGAGGCAGCTGGTGCAACATGGGTTCAGTTCGATGAACCATCTCTTGTAATGGATCTTGAGGCTCATCAGTTGGAAGCCTTTTCGAAGGCATATTCTTACTTGGAAGCATCATCTCTTGGTGTTAATCTGCTTGTAGAAACTTACTTTGCTGATATCCCTGTTGAGACTTACAAGGCCATTACTGGCTTGAAGGGTATCTCTGCTATTGGGTTTGATCTTATCCGTGGAACAAAGACTCTCGAACTCATCAAGGAGATTGGTTTCCCTGCTGACAAAATCTTGTTTGCAGGAGTAGTTGACGGCCGAAATATTTGGGCCAATGATCTGGCTGCTTCATTGACCGTTTTGGAAAGCCTTGAGAGCATAGTTGGGAAAGATAAACTAGTTGTCTCTACTTCCTGCTCCCTCTTGCACACGGCTGTGGATTTGGAAAATGAAACAAAGCTTGACAGTGAAATTAAGTCTTGGTTAGCTTTTGCTGCACAAAAGCTTATTGAAGTGGATGCCTTAGCCAAGGCATTGGCTGGTCAGAAAGATGAGGCATTCTTTGCGGTCAACGCATCTGCACTGGCTTCAAGGAGGACGTCTCCAAGAGTGACAAACGAGGCAGTTCAAAAAGCTGCTGCAGCGTTGAAGACTTCTGACCATCGACGAGCTACGCCAGTAAACATTCGTCTTGAGCAACAACAGAAAAAGTTGAATCTTCCAATTCTTCCCACGACAACAATTGGGTCATTCCCACAGACAGTTGAATTGCGTAGGGTTCGTCGTGAATTCAAGATAAACAAGATTTCAGAGGAAGAATATGTTAGCTCCATCAAGGAAGAAATTGCCAAGGTTGTCAAATTGCAAGAGGACCTTGATATTGATGTGCTTGTGCACGGAGAACCCGAGAGGAATGACATGGTGGAGTACTTTGGAGAACAGCTTCAGGGCTTTGCATTTACAGTCAATGGTTGGGTACAGTCTTATGGATCCCGTTGTGTGAAGCCACCAGTTATCTATGGTGATGTCAGTCGCCCAAAGGCTATGACTGTCTTTTGGTCCAAGATGGCTCAGAGCATGACTGCTCGACCCATGAAGGGAATGCTCACTGGCCCAGTGACAATTTTGAACTGGTCCTTTGTTAGAAATGATCAACCAAGATCTGAAACTTGCATGCAAATTGCCTTGGCCATCAAGGATGAGGTGGAAGACTTGGAAGCGGGTGGAATTCAGGTTATTCAAATTGACGAGGCTGCTCTTAGAGAAGGATTGCCTCTACGCAAGGCTGAACATGCTTATTACCTGGATTGGGCTGTACACGGATTCCGCATCACTAACTGTGGTGTGCAAGATACAACTCAGATCCATACCCACATGTGCTACTCTAACTTCAACGATATTATTCATTCAATCATTGATATGGATGCCGATGTAATCACCATTGAGAATTCTCGTTCCGATGAGAAACTTCTCTCAGTTTTCCGAGAGGGTGTGAAATATGGTGCCGGAATTGGCCCTGGTGTCTATGACATTCACTCTCCTCGCATTCCAAGCGTAGAAGAAATTGCAGATCGTATCAGCAAGATGCTTGCTGTGCTCGAAACAAACATACTATGGGTTAACCCTGACTGTGGTCTGAAGACCAGGAAGTACACCGAGGTCATTCCTGCCCTGACCAACGTGGTTGCAGCTGCCAAATTGCTGCGAGCTCAGTTGGCCAGTGCAAAGTGAGGCCATCCCAGCTATCTTCAAGTACTATGAGTGTTGGAATTTTTTTGTGGTTCTTTTCATAAATAACTTTTGTGTTTCTTATTTTCATTCTCATAAGTAGTTGATGTGGCTGAGTGCTCTCAAGGCAGGCTTTGGAGCCACATTTCTCCATCCAGAATATTTTCTTATTTACTAGTGAATATTAATTGAGTAAACCCTCAAAAGTGTCGGTGCCTCCATTCTCTTTGAA

Ace file of the UniGene biog2_v2.0_unigene14992

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15434	1/118
SustainPine v2.0	sp_v2.0_unigene24577	93/118
SustainPine v2.0	sp_v2.0_unigene25434	8/118
SustainPine v2.0	sp_v2.0_unigene60355	15/118
SustainPine v2.0	sp_v2.0_unigene82516	1/118

Source	Descriptions	Term	Type	Identity
AutoFact	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase n=5 Tax=core eudicotyledons RepID=METE_CATRO	-	-	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	5-methyltetrahydropteroyltriglutamate-homocysteine expressed	-	-	92%

Source	InterPros	Term	Type	Identity
Sma3	Cobalamin (vitamin B12)-independent methionine synthase MetE, N-terminal	IPR013215	-	-
Sma3	Methionine synthase, vitamin-B12 independent	IPR002629	-	-
Sma3	Cobalamin-independent methionine synthase	IPR006276	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPY2

Fln msg:

Fln protein: MASHVVGYPRMGPKRELKFALESFWDGKTSAAALETVAKELRSSIWKQMVAAGVKLIPSNTFSYYDQVLDTTAMLGAVPPRYGFAGGEIGFDTYFSMARGNATLPAMEMTKWFDTNYHYIVPELGPEIKFAYSSHKAVAEYKEAKELGIDTVPVIVGPVSYLLLSKPAKGVAKTFNLLTLLDSILPIYKQVVSELEAAGATWVQFDEPSLVMDLEAHQLEAFSKAYSYLEASSLGVNLLVETYFADIPVETYKAITGLKGISAIGFDLIRGTKTLELIKEIGFPADKILFAGVVDGRNIWANDLAASLTVLESLESIVGKDKLVVSTSCSLLHTAVDLENETKLDSEIKSWLAFAAQKLIEVDALAKALAGQKDEAFFAVNASALASRRTSPRVTNEAVQKAAAALKTSDHRRATPVNIRLEQQQKKLNLPILPTTTIGSFPQTVELRRVRREFKINKISEEEYVSSIKEEIAKVVKLQEDLDIDVLVHGEPERNDMVEYFGEQLQGFAFTVNGWVQSYGSRCVKPPVIYGDVSRPKAMTVFWSKMAQSMTARPMKGMLTGPVTILNWSFVRNDQPRSETCMQIALAIKDEVEDLEAGGIQVIQIDEAALREGLPLRKAEHAYYLDWAVHGFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSVEEIADRISKMLAVLETNILWVNPDCGLKTRKYTEVIPALTNVVAAAKLLRAQLASAK*

Protein Length: 768

Fln nts: ATGGGGATACTCTCCTTCAATCCTTTGAAGGAACAGCAGGAATCTATCTGTTTACTAACGGAATCTCTGCTGGTCTCCGTCTCTGTCTCTGGTTTGCAGCACCTTTTCTTCGAAGGGAAGTTAGGACTTTTCAAGCCCGAAAGCA_-_ATGGCTTCCCACGTTGTTGGATACCCTCGCATGGGCCCGAAGAGAGAGCTCAAGTTCGCTTTGGAGTCCTTCTGGGATGGCAAAACATCTGCTGCGGCCCTCGAGACTGTGGCTAAGGAACTGAGGTCTTCGATCTGGAAGCAGATGGTAGCTGCCGGAGTCAAATTGATTCCCAGCAACACTTTCTCGTACTACGATCAAGTTCTGGACACCACTGCCATGCTTGGAGCTGTTCCTCCTAGGTATGGCTTCGCTGGCGGTGAGATTGGATTCGACACTTACTTTTCCATGGCCCGAGGAAACGCCACACTCCCTGCAATGGAGATGACCAAGTGGTTTGACACCAACTATCACTACATCGTTCCAGAGTTGGGCCCGGAGATCAAATTTGCTTACTCATCACACAAGGCAGTAGCAGAATACAAGGAGGCTAAAGAGCTGGGCATTGATACTGTGCCCGTGATTGTAGGACCCGTGTCATACTTGCTATTGTCTAAGCCCGCAAAAGGCGTGGCAAAGACCTTCAATCTTCTTACTCTTCTTGATTCAATCCTTCCAATTTACAAGCAAGTTGTGTCTGAGTTGGAGGCAGCTGGTGCAACATGGGTTCAGTTCGATGAACCATCTCTTGTAATGGATCTTGAGGCTCATCAGTTGGAAGCCTTTTCGAAGGCATATTCTTACTTGGAAGCATCATCTCTTGGTGTTAATCTGCTTGTAGAAACTTACTTTGCTGATATCCCTGTTGAGACTTACAAGGCCATTACTGGCTTGAAGGGTATCTCTGCTATTGGGTTTGATCTTATCCGTGGAACAAAGACTCTCGAACTCATCAAGGAGATTGGTTTCCCTGCTGACAAAATCTTGTTTGCAGGAGTAGTTGACGGCCGAAATATTTGGGCCAATGATCTGGCTGCTTCATTGACCGTTTTGGAAAGCCTTGAGAGCATAGTTGGGAAAGATAAACTAGTTGTCTCTACTTCCTGCTCCCTCTTGCACACGGCTGTGGATTTGGAAAATGAAACAAAGCTTGACAGTGAAATTAAGTCTTGGTTAGCTTTTGCTGCACAAAAGCTTATTGAAGTGGATGCCTTAGCCAAGGCATTGGCTGGTCAGAAAGATGAGGCATTCTTTGCGGTCAACGCATCTGCACTGGCTTCAAGGAGGACGTCTCCAAGAGTGACAAACGAGGCAGTTCAAAAAGCTGCTGCAGCGTTGAAGACTTCTGACCATCGACGAGCTACGCCAGTAAACATTCGTCTTGAGCAACAACAGAAAAAGTTGAATCTTCCAATTCTTCCCACGACAACAATTGGGTCATTCCCACAGACAGTTGAATTGCGTAGGGTTCGTCGTGAATTCAAGATAAACAAGATTTCAGAGGAAGAATATGTTAGCTCCATCAAGGAAGAAATTGCCAAGGTTGTCAAATTGCAAGAGGACCTTGATATTGATGTGCTTGTGCACGGAGAACCCGAGAGGAATGACATGGTGGAGTACTTTGGAGAACAGCTTCAGGGCTTTGCATTTACAGTCAATGGTTGGGTACAGTCTTATGGATCCCGTTGTGTGAAGCCACCAGTTATCTATGGTGATGTCAGTCGCCCAAAGGCTATGACTGTCTTTTGGTCCAAGATGGCTCAGAGCATGACTGCTCGACCCATGAAGGGAATGCTCACTGGCCCAGTGACAATTTTGAACTGGTCCTTTGTTAGAAATGATCAACCAAGATCTGAAACTTGCATGCAAATTGCCTTGGCCATCAAGGATGAGGTGGAAGACTTGGAAGCGGGTGGAATTCAGGTTATTCAAATTGACGAGGCTGCTCTTAGAGAAGGATTGCCTCTACGCAAGGCTGAACATGCTTATTACCTGGATTGGGCTGTACACGGATTCCGCATCACTAACTGTGGTGTGCAAGATACAACTCAGATCCATACCCACATGTGCTACTCTAACTTCAACGATATTATTCATTCAATCATTGATATGGATGCCGATGTAATCACCATTGAGAATTCTCGTTCCGATGAGAAACTTCTCTCAGTTTTCCGAGAGGGTGTGAAATATGGTGCCGGAATTGGCCCTGGTGTCTATGACATTCACTCTCCTCGCATTCCAAGCGTAGAAGAAATTGCAGATCGTATCAGCAAGATGCTTGCTGTGCTCGAAACAAACATACTATGGGTTAACCCTGACTGTGGTCTGAAGACCAGGAAGTACACCGAGGTCATTCCTGCCCTGACCAACGTGGTTGCAGCTGCCAAATTGCTGCGAGCTCAGTTGGCCAGTGCAAAGTGA___GGCCATCCCAGCTATCTTCAAGTACTATGAGTGTTGGAATTTTTTTGTGGTTCTTTTCATAAATAACTTTTGTGTTTCTTATTTTCATTCTCATAAGTAGTTGATGTGGCTGAGTGCTCTCAAGGCAGGCTTTGGAGCCACATTTCTCCATCCAGAATATTTTCTTATTTACTAGTGAATATTAATTGAGTAAACCCTCAAAAGTGTCGGTGCCTCCATTCTCTTTGAA

Fln Alignment:

biogeco2_mira_c12287___MASHVVGYPRMGPKRELKFALESFWDGKTSAAALETVAKELRSSIWKQMVAAGVKLIPSNTFSYYDQVLDTTAMLGAVPPRYGFAGGEIGFDTYFSMARGNATLPAMEMTKWFDTNYHYIVPELGPEIKFAYSSHKAVAEYKEAKELGIDTVPVIVGPVSYLLLSKPAKGVAKTFNLLTLLDSILPIYKQVVSELEAAGATWVQFDEPSLVMDLEAHQLEAFSKAYSYLEASSLGVNLLVETYFADIPVETYKAITGLKGISAIGFDLIRGTKTLELIKEIGFPADKILFAGVVDGRNIWANDLAASLTVLESLESIVGKDKLVVSTSCSLLHTAVDLENETKLDSEIKSWLAFAAQKLIEVDALAKALAGQKDEAFFAVNASALASRRTSPRVTNEAVQKAAAALKTSDHRRATPVNIRLEQQQKKLNLPILPTTTIGSFPQTVELRRVRREFKINKISEEEYVSSIKEEIAKVVKLQEDLDIDVLVHGEPERNDMVEYFGEQLQGFAFTVNGWVQSYGSRCVKPPVIYGDVSRPKAMTVFWSKMAQSMTARPMKGMLTGPVTILNWSFVRNDQPRSETCMQIALAIKDEVEDLEAGGIQVIQIDEAALREGLPLRKAEHAYYLDWAVHGFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSVEEIADRISKMLAVLETNILWVNPDCGLKTRKYTEVIPALTNVVAAAKLLRAQLASAK
B8LPY2__________________MASHVVGYPRMGPKRELKFALESFWDGKSSAADLEAVAKGLRASIWKQMVAAGVKLIPSNTFSFYDQVLDTTAMLGAVPPRYSFAGGEIGFDTYFSMARGNATLPAMEMTKWFDTNYHYIVPELGPEIKFAYSSHKAVAEYKEAKELGIDTVPVIVGPVSYLLLSKPAKGVAKTFNLLSLLDAILPIYKQVVSELEAAGATFVQFDEPSLVMDLEAHQLEAFSKAYSYLDAASLGVNLLVETYFADIPVETYKTITGLKGISAIGFDFIRGSKTLGLIKEAGFPADKVLFAGVVDGRNIWANDLADSLSVLESLENIVGKDKLVVSTSCSLLHTAVDLVNETKLDSEIKSWLAFAAQKLIEVDALAKALAGQKDEAFFAANAAALASRRASPRVTNEAVQKAAAALKTSDHRRVTPVNVRLEQQQKKLNLPILPTTTIGSFPQTVELRRVRREYKINKISEDEYVSSIKEEIAKVVKLQEDLDIDVLVHGEPERNDMVEYFGEQLQGFAFTVNGWVQSYGSRCVKPPVIYGDVSRPKPMTVFWSKVAQSMTARPMKGMLTGPVTILNWSFVRNDQPRSETCMQIALAIKDEVEDLEAGGIQVIQIDEAALREGLPLRKAEHAYYLDWAVHGFRITNSGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRISKMLAVLETNILWVNPDCGLKTRKYPEVVPALTNMVAAAKLLRAQLASAK

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
245		71		28	1.0
459		81		18	0.999994
522	20	80			0.999996
567	83		16		0.999991
603			90	10	0.90298
663	90		10		0.90298
726		16		83	0.994512
772		20		80	0.995493
810	20	80			0.995493
812			20	80	0.995493
813			20	80	0.995493
814			20	80	0.995493
983	87			12	0.992554
1086	16		83		0.994512
1241		60		40	1.0
1700		87		12	0.992554
1864		42		57	1.0
1866			12	87	0.992554
1867			12	87	0.992554
2399		8		91	1.0
2402		91		8	1.0
2405	5		91		0.995208
2415	8		91		1.0
2463	7		92		0.999602
2466		92	7		0.999602
2502	12			75	0.975346
2613	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain