SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene14983

Length: 334 nt

UniGene Fasta

>biog2_v2.0_unigene14983
ATGGGGAATGTCACTGGACTTCGCACCTCTGCTGCAGCATATTCCATTTATGCACATTTTGTGGAGGCATTTTGCTGATAAGGTTTTAAATGAAGACCTTAGGCTGGTGATTGGGCAACAAGACAGGATGGTCAGAGGATCAAACGTGTGGAATTTGCCCGTATCCTATGACAAACTAGGTATTAGATACCGGATATGGAGAAATGCAGTTGAGGATGGGCAGCAGCGGCTGCCTTTCAGTGAATCTTAAGGGTATCAACGGGTCGAATGGTTGAGCTGTTTTGCTGTTGGTATTTAGACCTTAACATACAATAGAGCTAATATTTGATTCAAG

Ace file of the UniGene biog2_v2.0_unigene14983

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene188	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	chlorophyllide a oxygenase [Arabidopsis thaliana] sp\|Q9MBA1.1\|CAO_ARATH RecName: Full=Chlorophyllide a oxygenase, chloroplastic; Short=Chlorophyll a oxygenase; AltName: Full=Chlorophyll b synthase; Short=AtCAO; Flags: Precursor gb\|AAK43487.1\|AC084807_12 c	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	chlorophyllide a chloroplastic-like	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	Chlorophyllide-a oxygenase.	EC:1.13.12.14	-	0.0	84%

Source	KEGGs	Term	Identity
Blast2go	Porphyrin and chlorophyll metabolism	00860	84%
Blast2go	Metabolic pathways	01100	84%
Blast2go	Biosynthesis of secondary metabolites	01110	84%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	84%
Blast2go	chlorophyll biosynthetic process	GO:0015995	Biological Process	84%
Blast2go	2 iron, 2 sulfur cluster binding	GO:0051537	Molecular Function	84%
Blast2go	chlorophyllide a oxygenase [overall] activity	GO:0010277	Molecular Function	84%
Blast2go	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	GO:0016705	Molecular Function	84%
Blast2go	iron ion binding	GO:0005506	Molecular Function	84%
Blast2go	thylakoid membrane	GO:0042651	Cellular Component	84%
Blast2go	chloroplast inner membrane	GO:0009706	Cellular Component	84%

Source	InterPros	Term	Type	Identity
Sma3	Aminotransferase, class-II, pyridoxal-phosphate binding site	IPR001917	-	-
Sma3		IPR005806	-	-
Sma3	Pheophorbide a oxygenase	IPR013626	-	-
Sma3	Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site	IPR015881	-	-
Sma3	Rieske [2Fe-2S] iron-sulphur domain	IPR017941	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLA7

Fln msg: your sequence is shorter than subject: 83 - 303

Fln protein: WGMSLDFAPLLQHIPFMHILWRHFADKVLNEDLRLVIGQQDRMVRGSNVWNLPVSYDKLGIRYRIWRNAVEDGQQRLPFSES*

Protein Length: 84

Fln nts: ATGGGGAATGTCACTGGACTTCGCACCTCTGCTGCAGCATATTCCATTTATGCACATTTTGTGGAGGCATTTTGCTGATAAGGTTTTAAATGAAGACCTTAGGCTGGTGATTGGGCAACAAGACAGGATGGTCAGAGGATCAAACGTGTGGAATTTGCCCGTATCCTATGACAAACTAGGTATTAGATACCGGATATGGAGAAATGCAGTTGAGGATGGGCAGCAGCGGCTGCCTTTCAGTGAATCTTAA___GGGTATCAACGGGTCGAATGGTTGAGCTGTTTTGCTGTTGGTATTTAGACCTTAACATACAATAGAGCTAATATTTGATTCAAG

Fln Alignment:

biogeco2_mira_c12278___MSLDFAPLLQHIPFMHILWRHFADKVLNEDLRLVIGQQDRMVRGSNVWNLPVSYDKLGIRYRIWRNAVEDGQQRLPFSES
B8LLA7__________________MSLDFAPLLKHIPFMHILWRHFADKVLNEDLRLVIGQQDRMVRGANVWNLPVSYDKLGIRYRIWRNAVEDGQKQLPFSES

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain