SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene14977

Length: 409 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene14977
AGAGACTGGTAATCACCCGGATCCTAAAGATTGCATGAAGCGCCTCAGATTTATCGGAAGTCATCTGCGCCGTCGTCTTCGTAAGCTCAAGGCTCGGCGTAAGCGACATTTTTTGATGACAAGGAGAACGAAATCTCCACAGAGCCTAGACGTTTCAAGCGTTCTCGTCCTAACATTCCACGGACTCCAGATGGGAGGCCTATTCTTCCACTTGCTCTAACAGAACGTCTTACCATTGTGGATCTTGGGACGATTGAATATAAACGTGCGGGATTTCATACAGACCGACACATATTCCCTATTGGCTATAAATCTATAAGAAACTATGCCAGCATGGTGAAAAGGATGGACGGACTACATACACCTGTACAATTCTTGACGGTGGAAGTGCAGGTCCTATTTTTCGTGT

Ace file of the UniGene biog2_v2.0_unigene14977 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9974	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	F/Y-rich N-terminus family protein [Trichomonas vaginalis G3] gb\|EAY14498.1\| F/Y-rich N-terminus family protein [Trichomonas vaginalis G3]	-	-	7.0e-31	30%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	53%
Blast2go	protein	-	-	0.0	55%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	0.0	55%

Source	InterPros	Term	Type	Identity
Sma3	FY-rich, N-terminal	IPR003888	-	-
Sma3	FY-rich, C-terminal	IPR003889	-	-
Sma3	FY-rich, C-terminal subgroup	IPR018516	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9TB27

Fln msg: Separated hits, possible frame ERROR between 55 and 142, and overlapping frame ERROR between 339 and 339, Distance to subject end: 186 aas, your sequence is shorter than subject: 136 - 1121

Fln protein: ETGNHPDPKDCMKRLRFxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxEPRRFKRSRPNIPRTPDGRPILPLALTERLTIVDLGTIEYKRAGFHTDRHIFPIGYKSIRNYASxxxKDGRTTYTCTILDGGSAGPIFR

Protein Length: 137

Fln nts: AGAGACTGGTAATCACCCGGATCCTAAAGATTGCATGAAGCGCCTCAGATTTATxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAGAGCCTAGACGTTTCAAGCGTTCTCGTCCTAACATTCCACGGACTCCAGATGGGAGGCCTATTCTTCCACTTGCTCTAACAGAACGTCTTACCATTGTGGATCTTGGGACGATTGAATATAAACGTGCGGGATTTCATACAGACCGACACATATTCCCTATTGGCTATAAATCTATAAGAAACTATGCCAGCATxxxxxxAAAGGATGGACGGACTACATACACCTGTACAATTCTTGACGGTGGAAGTGCAGGTCCTATTTTTCGTGT

Fln Alignment:

biogeco2_mira_c12271___PDPKDCMKRLRFIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxEPRRFKRSRP-NIPRTPDGRPILPLALTERLTIVDLGTIEYKRAGFHTDRHIFPIGYKSIRNYASMVEKDGRTTYTCTILDGGSAGPIFR
A9TB27__________________PSSKACIKRVKFIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxEVKRFKYARAVEVARDSSSKPILPLILTDRLTLTNLGRIEPDRPGFHTERHIFPIGFTTLREHASMIDPNGRTTYTCTIIDTGGPGPIFR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain