SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene14959

Length: 455 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene14959
GCAAGAACTTGGTGATTGTCAGCAAATGTGCCAATGGCTAGAAAAGGAAGCTTAAAGAAGTAAAAGAGCAAGAACAGCAGAAACAGCAAAAGCGAATGAAGGTCTTGTCAGATCTGTTGATATCTGTTGCTAAAGCCGAACGGCAGGATGCAAGGACAAAGGTTCGCCAGGATTCTGTGAGGCTTGGTAATGTTGGAGTGATTAGGGCTGGAACAGTGATATCTGAGACTTGGGAGGATGGTCAAGTACTCAAAGACATTCAAGCTCACTTGAGGTCCTTGCTAGAACAAAAGGAGGCTATTGAAAGACACAGGAAATCCCCGAAAAAGCGACAAACTGATAAGAGTGAAGGGAGTGATAGTGAACCTGGAATGTCAGAGGAGGAATTCCTTATTCAAGATGAAATTTGCAAGTCTCGTCTTCAAGGCATCAAGCGAGAAGAGGATGCAGCACTT

Ace file of the UniGene biog2_v2.0_unigene14959 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11630	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	tousled-like protein kinase [Triticum aestivum]	-	-	59%
FL-Next	sp=Serine/threonine-protein kinase TOUSLED; Arabidopsis thaliana (Mouse-ear cress).	-	-	66%
Blast2go	serine threonine-protein kinase tousled-like	-	-	85%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	85%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	85%
Blast2go	ATP binding	GO:0005524	Molecular Function	85%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	85%
Blast2go	plastid	GO:0009536	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q39238

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 317 aas, your sequence is shorter than subject: 151 - 688

Fln protein: KNLVIVSKCANG*KRKLKEVKEQEQQKQQKRMKVLSDLLISVAKAERQDARTKVRQDSVRLGNVGVIRAGTVISETWEDGQVLKDIQAHLRSLLEQKEAIERHRKSPKKRQTDKSEGSDSEPGMSEEEFLIQDEICKSRLQGIKREEDAAL

Protein Length: 152

Fln nts: GCAAGAACTTGGTGATTGTCAGCAAATGTGCCAATGGCTAGAAAAGGAAGCTTAAAGAAGTAAAAGAGCAAGAACAGCAGAAACAGCAAAAGCGAATGAAGGTCTTGTCAGATCTGTTGATATCTGTTGCTAAAGCCGAACGGCAGGATGCAAGGACAAAGGTTCGCCAGGATTCTGTGAGGCTTGGTAATGTTGGAGTGATTAGGGCTGGAACAGTGATATCTGAGACTTGGGAGGATGGTCAAGTACTCAAAGACATTCAAGCTCACTTGAGGTCCTTGCTAGAACAAAAGGAGGCTATTGAAAGACACAGGAAATCCCCGAAAAAGCGACAAACTGATAAGAGTGAAGGGAGTGATAGTGAACCTGGAATGTCAGAGGAGGAATTCCTTATTCAAGATGAAATTTGCAAGTCTCGTCTTCAAGGCATCAAGCGAGAAGAGGATGCAGCACTT

Fln Alignment:

biogeco2_mira_c12250___LSDLLISVAKAERQDARTKVRQDSVRLGNVGVIRAGTVISETWEDGQVLKDIQAHLRSLLEQKEAIERHRKSPKKRQT-DKSEGSDSEPGMSEEEFLIQDEICKSRLQGIKREEDAAL
Q39238__________________ISDLLISVSKTERQEARTKVRNESLRLGSVGVLRTGTIIAETWEDGQMLKDLNAQLRQLLETKEAIERQRKLLKKRQNGDKNDGTDTESGAQEED-IIPDEVYKSRLTSIKREEEAVL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain