SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene14912

Length: 433 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene14912
ATGGGTTAAGAAAAGATGGGCCCGGAAAGAAAGTAGTGGATGTATTTTCACATGAGTTTAGACAACGACCTCATGAATATTATGTTGAGGCTGTGAATTAGGAAGAATACGTGTTGATGGAAAATTTGTTAGCAATTGGATACGTTGTTCGAGGTGGCCAGAAACTAAGTCATTTTGTTCACAGGCATGAACCTCCTGTGATGGTAGAGCGAGTTGTAATTCTGGAAGAAGGATGTGATGTTGTTACTGTGTGCAAGCCTGCATCTGCCCAGTACATCCATGCGGGCAGTATCGAAAGAACACAGTTATGGGTATTTTGCAGGCAGAGCATGGACTTGCTCCTTACCCAATACATCGCCTAGATAGATTAGTCTCTGGGCTTCTCATCTTTGCCAGGAATTCTTCTACAGCTGACCGATTTCGGGAAGAGATT

Ace file of the UniGene biog2_v2.0_unigene14912 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene37816	1/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RNA pseudourine synthase 7 [Arabidopsis thaliana] sp\|Q9LU60.1\|PUS7_ARATH RecName: Full=RNA pseudourine synthase 7; AltName: Full=RNA pseudouridylate synthase 7; AltName: Full=RNA-uridine isomerase 7 dbj\|BAA97376.1\| unnamed protein product [Arabidopsis tha	-	-	1.99993e-41	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Blast2go	rna pseudourine synthase 7	-	-	0.0	72%

Source	InterPros	Term	Type	Identity
Sma3	RNA-binding S4 domain	IPR002942	-	-
Sma3	Pseudouridine synthase, RsuA and RluB/C/D/E/F	IPR006145	-	-
Sma3	Pseudouridine synthase, RluC/RluD, conserved site	IPR006224	-	-
Sma3	Pseudouridine synthase, RluC/RluD	IPR006225	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A8J9

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 226 aas, your sequence is shorter than subject: 120 - 422

Fln protein: GLRKDGPGKKVVDVFSHEFRQRPHEYYVEAVN*EEYVLMENLLAIGYVVRGGQKLSHFVHRHEPPVMVERVVILEEGCDVVTVCKPASAQYIHAGSIERTQLWVFCRQSMDLLLTQYIA*

Protein Length: 121

Fln nts: ATGGGTTAAGAAAAGATGGGCCCGGAAAGAAAGTAGTGGATGTATTTTCACATGAGTTTAGACAACGACCTCATGAATATTATGTTGAGGCTGTGAATTAGGAAGAATACGTGTTGATGGAAAATTTGTTAGCAATTGGATACGTTGTTCGAGGTGGCCAGAAACTAAGTCATTTTGTTCACAGGCATGAACCTCCTGTGATGGTAGAGCGAGTTGTAATTCTGGAAGAAGGATGTGATGTTGTTACTGTGTGCAAGCCTGCATCTGCCCAGTACATCCATGCGGGCAGTATCGAAAGAACACAGTTATGGGTATTTTGCAGGCAGAGCATGGACTTGCTCCTTACCCAATACATCGCCTAGATAGATTAGTCTCTGGGCTTCTCATCTTTGCCAGGAATTCTTCTACAGCTGACCGATTTCGGGAAGAGATT

Fln Alignment:

biogeco2_mira_c12198___LRKDGPGKKVVDVFSHEFRQRPHXXXXXXXXXXXXVLMENLLAIGYVVRGGQKLSHFVHRHEPPVMVERVVILEEGCDVVTVCKPASAQYIHAGSIER
D5A8J9__________________VKKRWAGKKVVDVFSHEFRQRPHEYYVEAVKSGRIRVDGKLVAIGYVVRDGEKLSHFVHRHEPPVMAEPVVILEEGCDVVTVCKPASVP-IEAGKVQK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain