SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene14842

Length: 343 nt

UniGene Fasta

>biog2_v2.0_unigene14842
TCTGCCAGTGGATAGAGAGCTCTGCCCATTTGATCTGGCCCCTGTTACTTCCACAGCCATACAGATGCTCTTTGGGGACACTGTGGCTATAGCCTTGATGCAAGCAAAGAATATGACGAGAGAACAGTATGCTCTCAATCATCCTGCTGGTCGGATCGGTAAAAGGCTCATCTTCAGGGTGCAGGATGTGATGAAGAAGCATGATGAATTACCTCTGTGTAAGGAAATGACCTAATAATGGATCAGCTTATGGAGCTGACTAGTAAAGGATGTGGTTGTCTGCTAGTTGTTGATGAAGAATGCCACCTCATTGGGACTTTTACTGATGGAGACTTGCGTCGAG

Ace file of the UniGene biog2_v2.0_unigene14842

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene20301	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	sugar isomerase domain-containing protein [Arabidopsis thaliana] emb\|CAB77589.1\| sugar-phosphate isomerase-like protein [Arabidopsis thaliana] dbj\|BAE99073.1\| sugar-phosphate isomerase - like protein [Arabidopsis thaliana] gb\|AEE79267.1\| sugar isomerase d	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	protein	-	-	81%

Source	InterPros	Term	Type	Identity
Sma3	Cystathionine beta-synthase, core	IPR000644	-	-
Sma3	Sugar isomerase (SIS)	IPR001347	-	-
Sma3	Phosphosugar isomerase, KdsD/KpsF-type	IPR004800	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A8E9

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 226 and 226, Distance to subject end: 71 aas, your sequence is shorter than subject: 114 - 342

Fln protein: LPVDRELCPFDLAPVTSTAIQMLFGDTVAIALMQAKNMTREQYALNHPAGRIGKRLIFRVQDVMKKHDELPLCKxxDLIMDQLMELTSKGCGCLLVVDEECHLIGTFTDGDLRR

Protein Length: 115

Fln nts: TCTGCCAGTGGATAGAGAGCTCTGCCCATTTGATCTGGCCCCTGTTACTTCCACAGCCATACAGATGCTCTTTGGGGACACTGTGGCTATAGCCTTGATGCAAGCAAAGAATATGACGAGAGAACAGTATGCTCTCAATCATCCTGCTGGTCGGATCGGTAAAAGGCTCATCTTCAGGGTGCAGGATGTGATGAAGAAGCATGATGAATTACCTCTGTGTAAGxxxxxxGACCTAATAATGGATCAGCTTATGGAGCTGACTAGTAAAGGATGTGGTTGTCTGCTAGTTGTTGATGAAGAATGCCACCTCATTGGGACTTTTACTGATGGAGACTTGCGTCGAG

Fln Alignment:

biogeco2_mira_c12114___LPVDRELCPFDLAPVTSTAIQMLFGDTVAIALMQAKNMTREQYALNHPAGRIGKRLIFRVQDVMKKHDELPLCKENDLIMDQLMELTSKGCGCLLVVDEECHLIGTFTDGDLRR
D5A8E9__________________LPLDRELCPFDLAPVTSTAIQMLFGDTVAIALMQAKKLTREQYALNHPAGRIGKRLIFRVQDVMKRHDELPLCKENDLIMDQLMELTSKGCGCLLVVDEECHLIGTFTDGDLRR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain