SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene14837

Length: 836 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene14837

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15958	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Glucose-1-phosphate adenylyltransferase n=2 Tax=Picea sitchensis RepID=B8LNV7_PICSI	-	-	94%
FL-Next	sp=Glucose-1-phosphate adenylyltransferase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	adp-glucose pyrophosphorylase small subunit	-	-	92%

Source	GOs	Term	Type	Identity
Blast2go	starch metabolic process	GO:0005982	Biological Process	92%
Blast2go	biosynthetic process	GO:0009058	Biological Process	92%
Blast2go	transferase activity	GO:0016740	Molecular Function	92%
Blast2go	plastid	GO:0009536	Cellular Component	92%

Source	InterPros	Term	Type	Identity
Sma3	ADP-glucose pyrophosphorylase, conserved site	IPR005836	-	-
Sma3	Glucose-1-phosphate adenylyltransferase	IPR011831	-	-
Sma3	Nucleotidyl transferase	IPR005835	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPY4

Fln msg: Distance to subject end: 263 aas, your sequence is shorter than subject: 278 - 526

Fln protein: MGVRVSTPLNFGEFNTDEMAGVIAAGVANLNVLGRETAEFTSFRPVFLRGNSQGLSSASSLCDYRILADSKRKKHGIFRKQNINRSTVVSPRAVSDTFSELTCLDPVASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCINSNISKIYVLTQFNSASLNRHLSRAYASNMGSYKDEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEQQVMEFLILAGDHLYRMDYQKFIQAHRETNADITVAALPMDEKRATAFGLMKIN

Protein Length: 279

Fln nts: _-_ATGGGGGTAAGAGTCTCTACGCCATTGAATTTCGGGGAATTCAATACAGACGAAATGGCTGGCGTTATAGCCGCAGGAGTTGCAAATTTGAACGTTCTGGGCCGAGAAACTGCCGAGTTCACTTCGTTCAGGCCGGTATTTCTTCGAGGAAATTCTCAGGGACTCTCTTCGGCCTCTTCTTTGTGTGATTACAGAATTTTGGCGGATTCCAAGCGGAAGAAGCATGGGATTTTCAGGAAGCAGAATATTAATAGAAGCACAGTCGTTTCTCCACGGGCGGTTTCTGATACCTTCAGTGAACTGACCTGTTTAGATCCGGTCGCGAGTCGGAGTGTGCTGGGCATTATCCTAGGAGGTGGAGCTGGGACTCGTCTTTATCCGCTGACTAAGAAGAGAGCGAAACCAGCTGTTCCTTTGGGTGCCAATTATAGGCTGATCGATATCCCTGTTAGTAATTGCATAAATAGTAATATCTCTAAGATCTATGTTCTTACCCAGTTCAACTCGGCTTCTCTCAACCGTCATCTTTCACGGGCCTATGCAAGCAACATGGGCAGCTACAAGGATGAAGGATTTGTGGAAGTACTTGCTGCTCAGCAAAGCCCTGAAAATCCAAATTGGTTCCAGGGAACAGCAGATGCTGTGAGACAGTACTTGTGGCTTTTTGAGGAGCAACAAGTAATGGAATTTCTGATTCTTGCTGGAGATCATCTCTATCGTATGGATTACCAGAAATTCATTCAGGCTCACAGGGAAACCAATGCAGATATCACCGTGGCAGCTTTACCCATGGATGAGAAACGAGCAACAGCTTTTGGTCTAATGAAGATTAATGA

Fln Alignment:

biogeco2_mira_c12109___MAGVIAAGVANLN--VLGRETAEFTSFRPVFLRGNSQGLSSASSLCDYRILADSKRKKHGIFRKQNINRSTVVSPRAVSDTFSELTCLDPVASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCINSNISKIYVLTQFNSASLNRHLSRAYASNMGSYKDEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEQQVMEFLILAGDHLYRMDYQKFIQAHRETNADITVAALPMDEKRATAFGLMKIN
B8LPY4__________________MAGVMATGAANLNMNILARETADFTSFRPVFLRGNSQGLSSASSLCDTRISADSKQKKPWISRKQNGNRSTVVSPRAVSDTFNELTCLDPVASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCINSNISKIYVLTQFNSASLNRHLSRAYSSNMGSYKDEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEQQVMEFLILAGDHLYRMDYQKFIQAHRETNADITVAALPMDEKRATAFGLMKID

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
414	33			66	0.997454
416			33	66	0.997453
492		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain