SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene14813

Length: 299 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene14813
CTGTTAGCTCACTGAAAGGGGCTGGAGTCTTTGCCGTTGAACTCTTTTTGACTGGAGAAGGTCAGATTTACTTAACGAAGTGGCTCCAAGACCCCACAACAGTGGTCATCATACAATTGAAGCATGTTATGTCTCACAATTTGAGCAGCATTTGCGAGCTGTTCTTGGACTTCCGCTTGGTGATACATCTATGAAAGTCCCAGCTGCCATTATGTATAATTTACTTGGTGAAGAAGAGGGAGAAGAGGGTTTCTATATAGCCCATCAACTCATGAGAAGGGCTGTATCAGTTCCCGGCT

Ace file of the UniGene biog2_v2.0_unigene14813 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6229	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Aminoimidazole ribonucleotide carboxylase n=2 Tax=Physcomitrella patens RepID=A5A0Q9_9BRYO	-	-	64%
FL-Next	tr=Putative uncharacterized protein Sb03g002690; Sorghum bicolor (Sorghum) (Sorghum vulgare).	-	-	65%
Blast2go	phosphoribosylaminoimidazole carboxylase	-	-	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phosphoribosylaminoimidazole carboxylase.	EC:4.1.1.21	-	0.0	77%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	77%
Blast2go	Metabolic pathways	01100	77%
Blast2go	Biosynthesis of secondary metabolites	01110	77%

Source	GOs	Term	Type	Identity
Blast2go	pollen development	GO:0009555	Biological Process	77%
Blast2go	'de novo' IMP biosynthetic process	GO:0006189	Biological Process	77%
Blast2go	ligase activity	GO:0016874	Molecular Function	77%
Blast2go	phosphoribosylaminoimidazole carboxylase activity	GO:0004638	Molecular Function	77%
Blast2go	ATP binding	GO:0005524	Molecular Function	77%
Blast2go	chloroplast	GO:0009507	Cellular Component	77%

Source	InterPros	Term	Type	Identity
Sma3	N5-carboxyaminoimidazole ribonucleotide mutase PurE domain	IPR000031	-	-
Sma3	ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type	IPR003135	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Phosphoribosylaminoimidazole carboxylase, ATPase subunit	IPR005875	-	-
Sma3	ATP-grasp fold	IPR011761	-	-
Sma3	ATP-grasp fold, subdomain 2	IPR013816	-	-
Sma3		IPR013817	-	-
Sma3	Phosphoribosylaminoimidazole carboxylase	IPR016301	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: C5XLT6

Fln msg: Overlapping hits, possible frame ERROR between 80 and 68, Distance to subject end: 219 aas, your sequence is shorter than subject: 99 - 637

Fln protein: VSSLKGAGVFAVELFLTGEGQxxxxxxAPRPHNSGHHTIEACYVSQFEQHLRAVLGLPLGDTSMKVPAAIMYNLLGEEEGEEGFYIAHQLMRRAVSVPG

Protein Length: 100

Fln nts: CTGTTAGCTCACTGAAAGGGGCTGGAGTCTTTGCCGTTGAACTCTTTTTGACTGGAGAAGGTCAGxxxxxxxxxxxxxxxxxxGCTCCAAGACCCCACAACAGTGGTCATCATACAATTGAAGCATGTTATGTCTCACAATTTGAGCAGCATTTGCGAGCTGTTCTTGGACTTCCGCTTGGTGATACATCTATGAAAGTCCCAGCTGCCATTATGTATAATTTACTTGGTGAAGAAGAGGGAGAAGAGGGTTTCTATATAGCCCATCAACTCATGAGAAGGGCTGTATCAGTTCCCGGCT

Fln Alignment:

biogeco2_mira_c12081___VSSLKGAGVFAVELFLTGEGQIxxxxVAPRPHNSGHHTIEACYVSQFEQHLRAVLGLPLGDTSMKVPAAIMYNLLXXXXXXXGFYIAHQLMRRAVSVPG
C5XLT6__________________IKSLEGAGVFAVELFLTEEDQIxxxxVAPRPHNSGHHTIESCYTSQYEQHLRAILGLPLGDPSMKAPAAIMYNILGEDEGETGFYLAHQLIRRALNIPG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain