SustainPineDB

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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene14738

Length: 343 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene14738
GTATGGATGGCAGGGATGGTGAACACAATATTAGTCTTCAAGGTGGCATAGAATCGCCTACAGGGGCTGATTTAGTTGAATCGACATCTGGTAAAATTGATATGGAACAGATAGAGGAGGAAGTTATAGTGCCTAGCTTATCCAATTCTACTTGTCATGACCCAGGTCACTTCAAACACTTTGATAGTGTAAGGGACTCTGTGGGACATTACTATCTGAATGAAACAGGCCAGCCTATTAATGAGCGGAAATGGATGAAGAAAATTCAGCAAGAATGGAACATCCTTGAAAAAAATTTACCAGACACAATTTATGTGAGAATCTATGAGGATAGGATGGATTT

Ace file of the UniGene biog2_v2.0_unigene14738 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14568	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	sp=Probable ubiquitin-conjugating enzyme E2 23; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	41%
Blast2go	protein	-	-	9.14712e-20	56%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ubiquitin-conjugating enzyme, E2	IPR000608	-	0.0	-
Sma3	Ubiquitin-conjugating enzyme/RWD-like	IPR016135	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9ZVX1

Fln msg: Distance to subject end: 221 aas, your sequence is shorter than subject: 113 - 1102

Fln protein: MDGRDGEHNISLQGGIESPTGADLVESTSGKIDMEQIEEEVIVPSLSNSTCHDPGHFKHFDSVRDSVGHYYLNETGQPINERKWMKKIQQEWNILEKNLPDTIYVRIYEDRMD

Protein Length: 114

Fln nts: GTATGGATGGCAGGGATGGTGAACACAATATTAGTCTTCAAGGTGGCATAGAATCGCCTACAGGGGCTGATTTAGTTGAATCGACATCTGGTAAAATTGATATGGAACAGATAGAGGAGGAAGTTATAGTGCCTAGCTTATCCAATTCTACTTGTCATGACCCAGGTCACTTCAAACACTTTGATAGTGTAAGGGACTCTGTGGGACATTACTATCTGAATGAAACAGGCCAGCCTATTAATGAGCGGAAATGGATGAAGAAAATTCAGCAAGAATGGAACATCCTTGAAAAAAATTTACCAGACACAATTTATGTGAGAATCTATGAGGATAGGATGGATTT

Fln Alignment:

biogeco2_mira_c11996___TGADLVESTSGKIDMEQIEEEVIVPSLSNSTCHDPGHFKHFDSVRDSVGHYYLNETGQPINERKWMKKIQQEWNILEKNLPDTIYVRIYEDRMD
Q9ZVX1__________________TQANAKNILSGETSTFLEDEDKPVPSEGDSCS-----FRRFDISQDPLDHHFLGVDGQKTKERQWFKKVDQDWKILQNNLPDGIFVRAYEDRMD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain