SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
KEGGs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene14730

Length: 435 nt

UniGene Fasta

>biog2_v2.0_unigene14730
ATGGGATTGGGTATCCGTTCTGCCATTTCTTCACCTCGTTAGCCTGTATACAGATCTCAAACTAGCTTTCAGGGAATAGGAATAGAGTGTTCCTGTGGGTTGACATGGCGCATTTGTCGGCAACTTCCATATGCTGTTGCTCCAAGTTTCCAGTTTCCGTTCCTGCAAGTTCCAGTTGTTGGTACCCGCAAGGCATACACGTTTTGGCCAGTCAATGCGGCTTCTTATACACGAGGCTTTCGACGAGATTTTTCTTTGTATGAAAACTCAACAATTTCAAGGCTAGGGTTTTCTTCAAGTGAATTATTGGGGGAAACAATTTCTGATCGTGCAAGGTGGTCGAGCAAAGTATCCCAAGTTCAAGCTATTCAAATGGCACTGGCTGCTGAGTGATACAAAACTGACAAAGACAAAGAGTGGAGGAGGAATACGTGG

Ace file of the UniGene biog2_v2.0_unigene14730

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9784	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Argininosuccinate synthase n=2 Tax=Picea sitchensis RepID=A9NXV1_PICSI	-	-	91%
FL-Next	sp=Argininosuccinate synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	75%
Blast2go	argininosuccinate synthase	-	-	90%

Source	ECs	Term	Type	e value	Identity
Blast2go	Argininosuccinate synthase.	EC:6.3.4.5	-	0.0	90%

Source	KEGGs	Term	Identity
Blast2go	Alanine, aspartate and glutamate metabolism	00250	90%
Blast2go	Arginine and proline metabolism	00330	90%
Blast2go	Metabolic pathways	01100	90%
Blast2go	Biosynthesis of secondary metabolites	01110	90%

Source	GOs	Term	Type	Identity
Blast2go	arginine biosynthetic process	GO:0006526	Biological Process	90%
Blast2go	ATP binding	GO:0005524	Molecular Function	90%
Blast2go	argininosuccinate synthase activity	GO:0004055	Molecular Function	90%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	90%

Source	InterPros	Term	Type	Identity
Sma3	Argininosuccinate synthase	IPR001518	-	-
Sma3	Argininosuccinate synthase, conserved site	IPR018223	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NXV1

Fln msg: Overlapping hits, possible frame ERROR between 200 and 166, Unexpected STOP codon at 3' end. Distance to subject end: 402 aas, your sequence is shorter than subject: 97 - 512

Fln protein: MAHLSATSICCCSKFPVSVPxxxxxxxxxxxxxFWPVNAASYTRGFRRDFSLYENSTISRLGFSSSELLGETISDRARWSSKVSQVQAIQMALAAE*

Protein Length: 98

Fln nts: ATGGGATTGGGTATCCGTTCTGCCATTTCTTCACCTCGTTAGCCTGTATACAGATCTCAAACTAGCTTTCAGGGAATAGGAATAGAGTGTTCCTGTGGGTTGAC_-_ATGGCGCATTTGTCGGCAACTTCCATATGCTGTTGCTCCAAGTTTCCAGTTTCCGTTCCTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTTTTGGCCAGTCAATGCGGCTTCTTATACACGAGGCTTTCGACGAGATTTTTCTTTGTATGAAAACTCAACAATTTCAAGGCTAGGGTTTTCTTCAAGTGAATTATTGGGGGAAACAATTTCTGATCGTGCAAGGTGGTCGAGCAAAGTATCCCAAGTTCAAGCTATTCAAATGGCACTGGCTGCTGAGTGATACAAAACTGACAAAGACAAAGAGTGGAGGAGGAATACGTGG

Fln Alignment:

biogeco2_mira_c11986___MAHLSATSICCCSxxxxxxxxxxxxxxxxxxxFWPVNAASYTRGFRRDFSLYENSTISRLGFSSSELLGETISDRARWSSKVSQVQAIQMALAAE
A9NXV1__________________MAQLSATSICCWDxxxxxxxxxxxxxxxxxxxFSPANAAPYTRGFRHDFSLYENSTISKLGFSSSKLLGAAISHHARWSSEVSQVQAIQMVLATE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain