SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene14676

Length: 230 nt

UniGene Fasta

>biog2_v2.0_unigene14676
CAAGTTGCTTAAAGAGAGTCCAAATTCTAGAATTGGGTTTCGGCAGCAGTTTGCATATGGTGGGCTGGTCTTATGAGAGGTGCAGTTTCAATGGCCCTTGCTTACCATAAGTTCACAAGTTCTGGTCTTACAAAGTTGACTGAAAACGCAATCATGATCACAAGCACTATCTCAGTGGTCCTTTTCAGCACAGTGGTATTTGGATTGATTACAAAGCCTTTGATTAGACT

Ace file of the UniGene biog2_v2.0_unigene14676

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3160	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Sodium/hydrogen exchanger n=1 Tax=Picea sitchensis RepID=C0PSW3_PICSI	-	-	86%
FL-Next	sp=Sodium/hydrogen exchanger; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	na+ h+ antiporter	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	85%
Blast2go	regulation of pH	GO:0006885	Biological Process	85%
Blast2go	sodium ion transport	GO:0006814	Biological Process	85%
Blast2go	sodium:hydrogen antiporter activity	GO:0015385	Molecular Function	85%
Blast2go	integral to membrane	GO:0016021	Cellular Component	85%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PSW3

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 97 aas, your sequence is shorter than subject: 76 - 552

Fln protein: QVA*RESKF*NWVSAAVCIWWAGLMRGAVSMALAYHKFTSSGLTKLTENAIMITSTISVVLFSTVVFGLITKPLIR

Protein Length: 77

Fln nts: CAAGTTGCTTAAAGAGAGTCCAAATTCTAGAATTGGGTTTCGGCAGCAGTTTGCATATGGTGGGCTGGTCTTATGAGAGGTGCAGTTTCAATGGCCCTTGCTTACCATAAGTTCACAAGTTCTGGTCTTACAAAGTTGACTGAAAACGCAATCATGATCACAAGCACTATCTCAGTGGTCCTTTTCAGCACAGTGGTATTTGGATTGATTACAAAGCCTTTGATTAGACT

Fln Alignment:

biogeco2_mira_c11918___IWWAGLMRGAVSMALAYHKFTSSGLTKLTENAIMITSTISVVLFSTVVFGLITKPLIR
C0PSW3__________________IWWAGLMRGAVSMALAYNQFTRSGLTKLPENAIMITSTISVVLFSTVVFGMITKPLIR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain