SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene14673

Length: 283 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene14673
GGAAACTAACTTCATCGTGGGATGTTCTTCCCTCTGAGCTCCAGAGTCAGCCAACTATTATATCTGCCGACCCAGAAAATGGAGATGGAAAAGTAAGCGTCCCTATCTCATCAGGGCAGAACACTCCATTCCTTCTGACCATAGTCGGTCTGCTTCTTCAGCTTTGAAGCCCAAAGCAGGGATCTCCCGTAATGGATCTCCGCCATGGCGTAACGATGACAAGGATGGCCATTATGTGTTTGAACTTGGAGAGAATTTGACGCCACGCTATAAAATACTCAGT

Ace file of the UniGene biog2_v2.0_unigene14673 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13980	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Serine/threonine-protein kinase AFC2 n=4 Tax=Arabidopsis RepID=AFC2_ARATH	-	-	2.0e-34	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%
Blast2go	protein kinase	-	-	0.0	69%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ferrochelatase.	EC:4.99.1.1	-	0.0	69%

Source	KEGGs	Term	Type	Identity
Blast2go	Porphyrin and chlorophyll metabolism	00860		69%
Blast2go	Metabolic pathways	01100		69%
Blast2go	Biosynthesis of secondary metabolites	01110		69%
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	69%

Source	GOs	Term	Type	Identity
Blast2go	protein autophosphorylation	GO:0046777	Biological Process	69%
Blast2go	heme biosynthetic process	GO:0006783	Biological Process	69%
Blast2go	mRNA processing	GO:0006397	Biological Process	69%
Blast2go	ferrochelatase activity	GO:0004325	Molecular Function	69%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	69%
Blast2go	ATP binding	GO:0005524	Molecular Function	69%
Blast2go	protein binding	GO:0005515	Molecular Function	69%
Blast2go	chloroplast	GO:0009507	Cellular Component	69%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ACK0

Fln msg: Overlapping hits, possible frame ERROR between 182 and 116, Distance to subject end: 58 aas, your sequence is shorter than subject: 94 - 174

Fln protein: KLTSSWDVLPSELQSQPTIISADPENGDGKVSVPISSxxxxxxxxxxxxxxxxxxxxxxxxSRNGSPPWRNDDKDGHYVFELGENLTPRYKILS

Protein Length: 95

Fln nts: GGAAACTAACTTCATCGTGGGATGTTCTTCCCTCTGAGCTCCAGAGTCAGCCAACTATTATATCTGCCGACCCAGAAAATGGAGATGGAAAAGTAAGCGTCCCTATCTCATCAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTCCCGTAATGGATCTCCGCCATGGCGTAACGATGACAAGGATGGCCATTATGTGTTTGAACTTGGAGAGAATTTGACGCCACGCTATAAAATACTCAGT

Fln Alignment:

biogeco2_mira_c11915___KLTSSWDVLPSELQSQPTIISADPENGDGKVSVPISSGxxxxxxxxxxxxxxxxxxxxxxISRNGSPPWRNDDKDGHYVFELGENLTPRYKILS
D5ACK0__________________KLTSSWDVLPSQLQGQPTIIFTNPENGNGKVSAPISSGxxxxxxxxxxxxxxxxxxxxxxISRNGSPPWRNDDKEGHYVFELGENLTPRYKILS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain