SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene14481

Length: 367 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene14481
AGGGCTGAAATATAAAGAGCTCGTTGATTTCGGAACTGGTGGAGATCTGGCAGAGGCACCCGCGTTCATCAAAGAAGGAAGGTTCCAGGCATCAGGAGATTCAGCATCCAGCTTTTGATCTTTGTTATGGAGATGGAGAGATCTACAACAGAAAGGAGATCAAAATTGGAGGAGGCTTTGGAGGGAGTGATGAAGGCGACATCGGTGTTGTAGAGTTACAGTGCGTTCTCGGGCACAATGTGGGGTAACCAGCAACCGAATGGCCATTCAATCCCTCGTCCAGTCTACGATGGAATTGCTTCGCGATCAGTACAGAGATGCAGAGGACTCTGGCCAGCCTCCATCGTGCAATAAAAAGACATCCCAT

Ace file of the UniGene biog2_v2.0_unigene14481 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23283	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	52%
Blast2go	unknown [Picea sitchensis]	-	-	8.02142e-18	71%

Source	InterPros	Term	Type	e value	Identity
Sma3	Armadillo-like helical	IPR011989	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWN7

Fln msg: Separated hits, possible frame ERROR between 240 and 242, Unexpected stop codon in the beginning of your sequence, STOP codon was not found. Distance to subject end: 20 aas, your sequence is shorter than subject: 123 - 510

Fln protein: RAEI*RAR*FRNWWRSGRGTRVHQRRKVPGIRRFSIQLLIFVMEMERSTTERRSKLEEALEGVMKATSVL*SYSAFSGTxxGVTSNRMAIQSLVQSTMELLRDQYRDAEDSGQPPSCNKKTSH

Protein Length: 124

Fln nts: AGGGCTGAAATATAAAGAGCTCGTTGATTTCGGAACTGGTGGAGATCTGGCAGAGGCACCCGCGTTCATCAAAGAAGGAAGGTTCCAGGCATCAGGAGATTCAGCATCCAGCTTTTGATCTTTGTTATGGAGATGGAGAGATCTACAACAGAAAGGAGATCAAAATTGGAGGAGGCTTTGGAGGGAGTGATGAAGGCGACATCGGTGTTGTAGAGTTACAGTGCGTTCTCGGGCACAATxxxTGGGGTAACCAGCAACCGAATGGCCATTCAATCCCTCGTCCAGTCTACGATGGAATTGCTTCGCGATCAGTACAGAGATGCAGAGGACTCTGGCCAGCCTCCATCGTGCAATAAAAAGACATCCCAT

Fln Alignment:

biogeco2_mira_c11676___RVHQR--RKVPGIRRFSIQLLIFVMEME-RSTTERRSKLEEALEGVMKATSVL*SYSAFSGTMxGVTSNRMAIQSLVQSTMELLRD
A9NWN7__________________RRHPRPSKEVASIRRFSIELLIAVMEKDDKAALEERTDLVNALEGVMETTSEMESYSTFSGSVxGLSRHRIPIHSLVQSAMELLRD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain