SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene14469

Length: 290 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene14469
ATGGGGGATAAGGTTCGCATAAGTATTCTTCGTCCTTGCATTCCACCCAAATATACACAGGGCACGCACTTACATACAACAACTTACCAATCTTATAGGTTTTCTGCTATATCTGCTGTTGTTACAGATGGCTGTCCCAGCTGCTTCCCTGCCAACTTTTTCCGCTCTTTGTCCCAGAGAATCCCTGCAGGTCACTTCCTCACGTTTCGACAAAATGTGGGTGGTTGAAACGGGAGATCTTTCAATAACCATAATAAAAGGGTACGTTCTTGCAGTCATCTCTGAGAAGG

Ace file of the UniGene biog2_v2.0_unigene14469 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2004	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Aldose 1-epimerase, putative n=1 Tax=Ricinus communis RepID=B9S6E7_RICCO	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	aldose 1-epimerase family protein	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Aldose 1-epimerase.	EC:5.1.3.3	-	0.0	81%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Glycolysis / Gluconeogenesis	00010		0.0	81%
Blast2go	Biosynthesis of secondary metabolites	01110		0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	galactose metabolic process	GO:0006012	Biological Process	81%
Blast2go	carbohydrate binding	GO:0030246	Molecular Function	81%
Blast2go	protein binding	GO:0005515	Molecular Function	81%
Blast2go	aldose 1-epimerase activity	GO:0004034	Molecular Function	81%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	81%
Blast2go	apoplast	GO:0048046	Cellular Component	81%

Source	InterPros	Term	Type	e value	Identity
Sma3	Aldose 1-/Glucose-6-phosphate 1-epimerase	IPR008183	-	0.0	-
Sma3	Glycoside hydrolase-type carbohydrate-binding, subgroup	IPR014718	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PRS2

Fln msg: Distance to subject end: 117 aas, your sequence is shorter than subject: 54 - 171

Fln protein: MAVPAASLPTFSALCPRESLQVTSSRFDKMWVVETGDLSITIIKGYVLAVISEK

Protein Length: 55

Fln nts: ATGGGGGATAAGGTTCGCATAAGTATTCTTCGTCCTTGCATTCCACCCAAATATACACAGGGCACGCACTTACATACAACAACTTACCAATCTTATAGGTTTTCTGCTATATCTGCTGTTGTTACAG_-_ATGGCTGTCCCAGCTGCTTCCCTGCCAACTTTTTCCGCTCTTTGTCCCAGAGAATCCCTGCAGGTCACTTCCTCACGTTTCGACAAAATGTGGGTGGTTGAAACGGGAGATCTTTCAATAACCATAATAAAAGGGTACGTTCTTGCAGTCATCTCTGAGAAGG

Fln Alignment:

biogeco2_mira_c11663___MAVPAASLPTFSALCPRESLQVTSSRFDKMWVV
C0PRS2__________________MAVPAASLLTASALCPRESMQVTSSRFNQMWVV

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
171	66	33			0.997452
172	66	33			0.997452
175			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain