SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene14434

Length: 425 nt

UniGene Fasta

>biog2_v2.0_unigene14434
TATGAGTTTATGCCTCGAGGTAGCCTTGGAGAATCATCTCTTCAGAAGGTCCCTGCCCCTGCCATGGTCTATCAGGATGAAAATTGCATTGGGTGCAGCCAAAGGCCTGGCATATCTCCATGGAGGAGCTGAAAGACCTGTGATTTATCGGGATTTTAAGACGTCCAACATCCTGTTGGATTCGGAATATAATGCCAAACTTTCTGACTTTGGTCTAGCAAAAGATGGACCTGAAGGAGACAAAACTCATGTTTCTACTCGAGTCATGGGAACTTATGGCTATGCAGCTCCTGAGTATGTAATGACTGGACATTTGACATCGAGGAGTGATGTCTATAGCTTTGGTGTTGTTCTACTTGAAATGTTAACTGGTCGAAGATCCATGGACAAAAACAGGCCTAGTGGGGAGCACAATCTGGTGGAGT

Ace file of the UniGene biog2_v2.0_unigene14434

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene783	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Whole genome shotgun sequence of line PN40024, scaffold_26.assembly12x (Fragment) n=3 Tax=rosids RepID=D7TNE7_VITVI	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	probable receptor-like protein kinase at5g15080-like	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-tyrosine kinases.	EC:2.7.10.-	-	0.0	82%
Blast2go	Mitogen-activated protein kinase kinase kinase.	EC:2.7.11.25	-	0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	82%
Blast2go	protein tyrosine kinase activity	GO:0004713	Molecular Function	82%
Blast2go	ATP binding	GO:0005524	Molecular Function	82%
Blast2go	MAP kinase kinase kinase activity	GO:0004709	Molecular Function	82%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRT7

Fln msg: Distance to subject end: 134 aas, your sequence is shorter than subject: 141 - 484

Fln protein: MSLCLEVALENHLFRRSLPLPWSIRMKIALGAAKGLAYLHGGAERPVIYRDFKTSNILLDSEYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSRSDVYSFGVVLLEMLTGRRSMDKNRPSGEHNLVE

Protein Length: 142

Fln nts: TATGAGTTTATGCCTCGAGGTAGCCTTGGAGAATCATCTCTTCAGAAGGTCCCTGCCCCTGCCATGGTCTATCAGGATGAAAATTGCATTGGGTGCAGCCAAAGGCCTGGCATATCTCCATGGAGGAGCTGAAAGACCTGTGATTTATCGGGATTTTAAGACGTCCAACATCCTGTTGGATTCGGAATATAATGCCAAACTTTCTGACTTTGGTCTAGCAAAAGATGGACCTGAAGGAGACAAAACTCATGTTTCTACTCGAGTCATGGGAACTTATGGCTATGCAGCTCCTGAGTATGTAATGACTGGACATTTGACATCGAGGAGTGATGTCTATAGCTTTGGTGTTGTTCTACTTGAAATGTTAACTGGTCGAAGATCCATGGACAAAAACAGGCCTAGTGGGGAGCACAATCTGGTGGAGT

Fln Alignment:

biogeco2_mira_c11622___ALENHLFRRSLPLPWSIRMKIALGAAKGLAYLHGGAERPVIYRDFKTSNILLDSEYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSRSDVYSFGVVLLEMLTGRRSMDKNRPSGEHNLVE
B8LRT7__________________SLENHLFRRSLPLPWSIRMKIALGAAKGLAFLHGGAERPVIYRDFKTSNILLDSEYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSRSDVYSFGVVLLEMLTGRRSMDKSRPSGEHNLVE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain