SustainPineDB

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Assembly info
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ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene14342

Length: 339 nt

UniGene Fasta

>biog2_v2.0_unigene14342
ATGGGGCCTGCTCTGTTAGCAGACCTGTCATCAGGAGAACAGAGCATTGTTGCTGTTGCTTTTGGTTATACTAGGTTGTTTCAACCTGATAAACCAGTCACAAAAGCACAGGCTGCTGTTGCTCTTGCTACTGGAGAGGCAGCAGAACTTGTCTCAGAGGAGCTAGCTCGTATTGAAGCAGAATCATTGGCTGATACTGCAGTTGCAACACATGCTGCTCTAGAAGCTCAAGTCCAGAAGGATCTTAATGCATCCTTTGAAAAGGAGCTTCAATTAGAGAGGGAGAAAATAGAAGCGGCTGAGAGATTAGCTGAAGATGTAAGGTCGGAGTTAGAAAGA

Ace file of the UniGene biog2_v2.0_unigene14342

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3334	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Caldesmon multi-domain protein	-	-	2.0e-09	27%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	72%
Blast2go	uncharacterized protein	-	-	0.0	68%

Source	GOs	Term	Type	Identity
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	68%
Blast2go	mitochondrion	GO:0005739	Cellular Component	68%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	68%

Source	InterPros	Term	Type	e value	Identity
Sma3	S-layer homology domain	IPR001119	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6H6M7

Fln msg: Distance to subject end: 249 aas, your sequence is shorter than subject: 113 - 1079

Fln protein: MGPALLADLSSGEQSIVAVAFGYTRLFQPDKPVTKAQAAVALATGEAAELVSEELARIEAESLADTAVATHAALEAQVQKDLNASFEKELQLEREKIEAAERLAEDVRSELER

Protein Length: 114

Fln nts: ATGGGGCCTGCTCTGTTAGCAGACCTGTCATCAGGAGAACAGAGCATTGTTGCTGTTGCTTTTGGTTATACTAGGTTGTTTCAACCTGATAAACCAGTCACAAAAGCACAGGCTGCTGTTGCTCTTGCTACTGGAGAGGCAGCAGAACTTGTCTCAGAGGAGCTAGCTCGTATTGAAGCAGAATCATTGGCTGATACTGCAGTTGCAACACATGCTGCTCTAGAAGCTCAAGTCCAGAAGGATCTTAATGCATCCTTTGAAAAGGAGCTTCAATTAGAGAGGGAGAAAATAGAAGCGGCTGAGAGATTAGCTGAAGATGTAAGGTCGGAGTTAGAAAGA

Fln Alignment:

biogeco2_mira_c11517___PALLADLSSGEQSIVAVAFGYTRLFQPDKPVTKXXXXXXXXXXXXXELVSEELARIEAESLADTAVATHAALEAQVQKDLNASFEKELQLEREKIEAAERLAEDVRSELER
F6H6M7__________________PALVADASAGEQGIIALAFGYTRLFQPNKPVTKAQAAIALATGESSDIVSEELARIEAEAMAEKAVAEHSALVDQVEKELNASFEKELSLERKKIDAMEKLAEEARQELEK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain