SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene14319

Length: 240 nt

UniGene Fasta

>biog2_v2.0_unigene14319
AAGTCTTTCAAGGAAATGGTAGCTATGTGCTTGGTAAAAAGATCCTACAAAGCGACCATCAGCAACAAAGCTATTGAAACATCACTTCTTCAAGCATGCCCGTTCAAATGACTATGTGGCTCGAACAGTTCTTGATGGCTTACCTCCTCTTGGTGAACGCTGTAAGAACTTGAAGCTAAGAGAAATGGACAGAGTGGCACAAAATAAAATGGCTTATGAAGAGAAAGAAGAGAGATCACA

Ace file of the UniGene biog2_v2.0_unigene14319

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3468	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Protein kinase n=1 Tax=Carica papaya RepID=A7L4B0_CARPA	-	-	80%
FL-Next	tr=Serine/threonine protein kinase, putative; Ricinus communis (Castor bean).	-	-	68%
Blast2go	protein	-	-	88%

Source	ECs	Term	Type	e value	Identity
Blast2go	Mitogen-activated protein kinase kinase kinase.	EC:2.7.11.25	-	0.0	88%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	88%
Blast2go	ATP binding	GO:0005524	Molecular Function	88%
Blast2go	MAP kinase kinase kinase activity	GO:0004709	Molecular Function	88%
Blast2go	plasma membrane	GO:0005886	Cellular Component	88%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Ribosome maturation factor RimP	IPR003728	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9SF78

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 25 aas, your sequence is shorter than subject: 79 - 352

Fln protein: SLSRKW*LCAW*KDPTKRPSATKLLKHHFFKHARSNDYVARTVLDGLPPLGERCKNLKLREMDRVAQNKMAYEEKEERS

Protein Length: 80

Fln nts: AAGTCTTTCAAGGAAATGGTAGCTATGTGCTTGGTAAAAAGATCCTACAAAGCGACCATCAGCAACAAAGCTATTGAAACATCACTTCTTCAAGCATGCCCGTTCAAATGACTATGTGGCTCGAACAGTTCTTGATGGCTTACCTCCTCTTGGTGAACGCTGTAAGAACTTGAAGCTAAGAGAAATGGACAGAGTGGCACAAAATAAAATGGCTTATGAAGAGAAAGAAGAGAGATCACA

Fln Alignment:

biogeco2_mira_c11491___KDPTKRPSATKLLKHHFFKHARSNDYVARTVLDGLPPLGERCKNLKLREMDRVAQNKMAYEEKEERS
B9SF78__________________KDPKKRPSSEKLLKHHFFKHARSNEYLARTILDGLAPLGERFRMLKAKEADLLVQNKALYEDKEQLS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain