SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene14315

Length: 420 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene14315
TGATTTAGTTAATTAGCATTCTATCCATATCTGGGCTTATAGGTTTTATTCTTCTCCTTAGCTTCCTCCCAGTCGAAGGCCCATTTATGTGGTAGATTTTGCCTGTTATAAGCCCTCTGAGGAATTTGGGGTAACCAAAGAGTATTTCATAGAACACTCTAAGAAATCTGGCCTATTTGATGATGGAAGCTTGAGGTTTCAGAAGAAAATATTAGNGAAATCTGGGCTTGGAGAATGCACGTACTTTCCGGGAGCTATGTTGGCTTCCCCACCTCGCCTCACAATGAAGGAAGCTCGTGCAGAAGCAGAGATGGTGATGTTTGGAGCCCTGGATGAGGTCTTTGAGAAATGTAAAATCAGACCAAAGGATATTAGTATCCTAGTGGTAAATTGCAGCTTGTTTAATTCAACTCCATCTCT

Ace file of the UniGene biog2_v2.0_unigene14315 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9015	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	3-ketoacyl-CoA synthase n=1 Tax=Picea sitchensis RepID=A9NVH1_PICSI	-	-	60%
FL-Next	sp=3-ketoacyl-CoA synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	68%
Blast2go	3-ketoacyl- synthase 10-like	-	-	73%

Source	GOs	Term	Type	Identity
Blast2go	fatty acid biosynthetic process	GO:0006633	Biological Process	73%
Blast2go	response to cold	GO:0009409	Biological Process	73%
Blast2go	very long-chain fatty acid metabolic process	GO:0000038	Biological Process	73%
Blast2go	cuticle development	GO:0042335	Biological Process	73%
Blast2go	response to light stimulus	GO:0009416	Biological Process	73%
Blast2go	epidermal cell differentiation	GO:0009913	Biological Process	73%
Blast2go		GO:0008415	Molecular Function	73%
Blast2go	membrane	GO:0016020	Cellular Component	73%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	73%
Blast2go	response to karrikin	GO:0080167	Biological Process	73%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Chalcone/stilbene synthase, C-terminal	IPR012328	-	-
Sma3	Very-long-chain 3-ketoacyl-CoA synthase	IPR012392	-	-
Sma3	FAE1/Type III polyketide synthase-like protein	IPR013601	-	-
Sma3	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal	IPR013747	-	-
Sma3	Thiolase-like, subgroup	IPR016038	-	-
Sma3	Ribosomal protein S10, conserved site	IPR018268	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVH1

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 297 aas, your sequence is shorter than subject: 139 - 530

Fln protein: DLVN*HSIHIWAYRFYSSP*LPPSRRPIYVVDFACYKPSEEFGVTKEYFIEHSKKSGLFDDGSLRFQKKILVKSGLGECTYFPGAMLASPPRLTMKEARAEAEMVMFGALDEVFEKCKIRPKDISILVVNCSLFNSTPS

Protein Length: 140

Fln nts: TGATTTAGTTAATTAGCATTCTATCCATATCTGGGCTTATAGGTTTTATTCTTCTCCTTAGCTTCCTCCCAGTCGAAGGCCCATTTATGTGGTAGATTTTGCCTGTTATAAGCCCTCTGAGGAATTTGGGGTAACCAAAGAGTATTTCATAGAACACTCTAAGAAATCTGGCCTATTTGATGATGGAAGCTTGAGGTTTCAGAAGAAAATATTAGtGAAATCTGGGCTTGGAGAATGCACGTACTTTCCGGGAGCTATGTTGGCTTCCCCACCTCGCCTCACAATGAAGGAAGCTCGTGCAGAAGCAGAGATGGTGATGTTTGGAGCCCTGGATGAGGTCTTTGAGAAATGTAAAATCAGACCAAAGGATATTAGTATCCTAGTGGTAAATTGCAGCTTGTTTAATTCAACTCCATCTCT

Fln Alignment:

biogeco2_mira_c11485___VVDFACYKPSEEFGVTKEYFIEHSKKSGLFDDGSLRFQKKILVKSGLGECTYFPGAMLASPPRLTMKEARAEAEMVMFGALDEVFEKCKIRPKDISILVVNCSLFNSTPS
A9NVH1__________________LVDFACFKPSDELKVSKEEFISLAKKSGHFDDASLEFQKRILERSGVGDETYLPKAVMGPGLCSTMKEGRAEAEMVMFGALDELFEKCKVRPKDVGILVVNCSLFNPTPS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain