SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene14314

Length: 457 nt

UniGene Fasta

>biog2_v2.0_unigene14314
ATGGGGGATTTGCCTATACCAGCGCTTACAGATCTTGGTTTTGGAGATGTGTCTCAGGAAGAATGCACTCCTTTTGTTGGTGGTGAAACAGAAGCACTGAAGAGAATGGATGAATCTCTACAAGATCAGGAATGGGTAGCAGCATTTGAAAAGCCTAAAGGGGACCCAACTGCATTCTTGAAGCCCGCCACGACTGCTTTTTCACTGTACTTGCAGTTGTTATGGAGAGAGTTTTTCTACACAGTGGCATACGGGACACCCAAGTTTGATCAAATGGAGGGAAATCCAATTTGCAAACAGATTCCATGGAATGATAATGATAGCCTACTTTCTGTTTGGAGAGATGGTCAGACAGGATACCCCTGGATTGATGCAGCCATGGTGCAGCTTCGGAAATGGGGATGGATGCACCATCTTGCTCGTCATGCAGTTGCATGTTTTTAACTCGTGGTGACTT

Ace file of the UniGene biog2_v2.0_unigene14314

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene28473	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	putative 6-4 photolyase (UVR3) [Oryza sativa Japonica Group] dbj\|BAD38427.1\| putative 6-4 photolyase (UVR3) [Oryza sativa Japonica Group]	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	74%
Blast2go	6-4 photolyase	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	(6-4)DNA photolyase.	EC:4.1.99.13	-	0.0	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to UV	GO:0009411	Biological Process	0.0	83%
Blast2go	DNA (6-4) photolyase activity	GO:0003914	Molecular Function	0.0	83%

Source	InterPros	Term	Type	Identity
Sma3	AMP-dependent synthetase/ligase	IPR000873	-	-
Sma3	DNA photolyase, FAD-binding/Cryptochrome, C-terminal	IPR005101	-	-
Sma3	DNA photolyase, N-terminal	IPR006050	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKF0

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 166 aas, your sequence is shorter than subject: 148 - 431

Fln protein: MGDLPIPALTDLGFGDVSQEECTPFVGGETEALKRMDESLQDQEWVAAFEKPKGDPTAFLKPATTAFSLYLQLLWREFFYTVAYGTPKFDQMEGNPICKQIPWNDNDSLLSVWRDGQTGYPWIDAAMVQLRKWGWMHHLARHAVACF*

Protein Length: 149

Fln nts: ATGGGGGATTTGCCTATACCAGCGCTTACAGATCTTGGTTTTGGAGATGTGTCTCAGGAAGAATGCACTCCTTTTGTTGGTGGTGAAACAGAAGCACTGAAGAGAATGGATGAATCTCTACAAGATCAGGAATGGGTAGCAGCATTTGAAAAGCCTAAAGGGGACCCAACTGCATTCTTGAAGCCCGCCACGACTGCTTTTTCACTGTACTTGCAGTTGTTATGGAGAGAGTTTTTCTACACAGTGGCATACGGGACACCCAAGTTTGATCAAATGGAGGGAAATCCAATTTGCAAACAGATTCCATGGAATGATAATGATAGCCTACTTTCTGTTTGGAGAGATGGTCAGACAGGATACCCCTGGATTGATGCAGCCATGGTGCAGCTTCGGAAATGGGGATGGATGCACCATCTTGCTCGTCATGCAGTTGCATGTTTTTAACTCGTGGTGACTT

Fln Alignment:

biogeco2_mira_c11484___DLPIPALTDLGFGDVSQEECTPFVGGETEALKRMDESLQDQEWVAAFEKPKGDPTAFLKPATTAFSLYL---------------------------------QLLWREFFYTVAYGTPKFDQMEGNPICKQIPWNDNDSLLSVWRDGQTGYPWIDAAMVQLRKWGWMHHLARHAVACF
B8LKF0__________________DLPIPTLTDLGFGDVSQEECNPFIGGETEALKRMDASIQDQKWVAAFEKPKGDPTAFLKPATTVLSPYLKFGCLSSRLFYQRLQEVYRKVKKHTEPPVSLEGQLLWREFFYTVAYGTPKFDQMEGNPICKQIPWNDDDSLLSAWRDGQTGYPWIDAVMVQLRKWGWMHHLARHAVACF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain