SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene14290

Length: 457 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene14290
TCTTGTTGACTGTGGACCTGATCAGCAATGTGTCCTTGGTTTATTGTTCTGGTTATAACAAGTGGACAGACTCTAATATTGGCAGGGGGTATTGTGGCACTTGGAAAATTTGATGCTCTGCACGTTGGCCACCGTGAACTGGCAATACAGGCTGCAAAATAGGGGTGCCTTTCCTTTTGTCTTTTGTAGGAATTGCTGAAGTGCTTGGCTGGGAGAATAGGTTGCCGATTGTTGCCAAATGTGATAGAAAGCGTGTACTTTCTCTGTGGGCACCTTTATGTGGTGGTGTGGTTCCACATGAATACCATGTTCAATTTTCTCAAGTGCGTTATTTGAGTCCTCGCCAATTTGTAGAGAGGCTATCAAAGGAATTAGGAGTAGAGGGAGTGGTAGCAGGTGCAAATTACAGATTTGGGTACAAGGCTTCGGGTGATGCATCCGATTTGGTCCATTTGTG

Ace file of the UniGene biog2_v2.0_unigene14290 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3593	1/2
SustainPine v2.0	sp_v2.0_unigene70525	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	Protein-s isoprenylcysteine O-methyltransferase, putative n=1 Tax=Ricinus communis RepID=B9RUA0_RICCO	-	-	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	73%
Blast2go	riboflavin biosynthesis expressed	-	-	72%

Source	ECs	Term	Type	e value	Identity
Blast2go	FAD synthetase.	EC:2.7.7.2	-	0.0	72%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Riboflavin metabolism	00740		0.0	72%
Blast2go	Metabolic pathways	01100		0.0	72%

Source	GOs	Term	Type	Identity
Blast2go	riboflavin biosynthetic process	GO:0009231	Biological Process	72%
Blast2go	FMN adenylyltransferase activity	GO:0003919	Molecular Function	72%
Blast2go	plastid	GO:0009536	Cellular Component	72%

Source	InterPros	Term	Type	Identity
Sma3	Pantoate-beta-alanine ligase	IPR003721	-	-
Sma3	Cytidyltransferase-related	IPR004821	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-
Sma3	FAD synthetase	IPR015864	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLP5

Fln msg: Overlapping hits, possible frame ERROR between 198 and 156, Unexpected stop codon in the beginning of your sequence, Distance to subject end: 159 aas, your sequence is shorter than subject: 152 - 362

Fln protein: SC*LWT*SAMCPWFIVLVITSGQTLILAGGIVALGKFDALHVGHRELAIQAxxxxxxxxxxxxxxxxVLGWENRLPIVAKCDRKRVLSLWAPLCGGVVPHEYHVQFSQVRYLSPRQFVERLSKELGVEGVVAGANYRFGYKASGDASDLVHL

Protein Length: 153

Fln nts: TCTTGTTGACTGTGGACCTGATCAGCAATGTGTCCTTGGTTTATTGTTCTGGTTATAACAAGTGGACAGACTCTAATATTGGCAGGGGGTATTGTGGCACTTGGAAAATTTGATGCTCTGCACGTTGGCCACCGTGAACTGGCAATACAGGCTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGTGCTTGGCTGGGAGAATAGGTTGCCGATTGTTGCCAAATGTGATAGAAAGCGTGTACTTTCTCTGTGGGCACCTTTATGTGGTGGTGTGGTTCCACATGAATACCATGTTCAATTTTCTCAAGTGCGTTATTTGAGTCCTCGCCAATTTGTAGAGAGGCTATCAAAGGAATTAGGAGTAGAGGGAGTGGTAGCAGGTGCAAATTACAGATTTGGGTACAAGGCTTCGGGTGATGCATCCGATTTGGTCCATTTGTG

Fln Alignment:

biogeco2_mira_c11451___GGIVALGKFDALHVGHRELAIQAAxxxxxxxxxxxxxxxxxGWENRLPIVAKCDRKRVLSLWAPLCGGVVPHEYHVQFSQVRYLSPRQFVERLSKELGVEGVVAGANYRFGYKASGDASDLVHL
B8LLP5__________________GGIVALGKFDALHVGHRELAIRAAxxxxxxxxxxxxxxxxxGLEKRLPVVAKCDRKRVLSLWAPLCDGVVPHEYHVQFAHVRYLSPRQFVEKLSKELGVKGVVAGANYRFGYKALGDASDLVQL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain