SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene14281

Length: 387 nt

UniGene Fasta

>biog2_v2.0_unigene14281
ATGGGGAGGGTTCAACGAGATAATGGGGCTCAGGGGTTTTAGGGTTCTCAGAAATTCTTCGCAGCTCGATTATTCAAAATTGTTTCGATCGAACCGTGGTGTTTCCTGTGTGGAGTCTTCACTGTTATCCTCAACTTCTTTCGAGCATGGAGAAACGTCCATTTACGGACCTCTTGGATTCTGCTCTGCGAAATACACTACAACAACAACGAATGGTATGTGGTCCTTCATTTCTGCTCGAGGACTTTGCTCATTTGCCCCAACACCGCAGACAGACATTGTAATGTCACCATCAGAGTTATTGGCAGCACAGGCATCATATGCTGCACAAAGGGTTCAAGGCAAGCTTCAGGACTTAGCACTAAGAGTGACAAATATGTGTAATGA

Ace file of the UniGene biog2_v2.0_unigene14281

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7439	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	50S ribosomal protein L4 [Arabidopsis thaliana]	-	-	6.0e-06	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	74%
Blast2go	50s ribosomal protein l4-like	-	-	0.0	69%

Source	GOs	Term	Type	Identity
Blast2go	translation	GO:0006412	Biological Process	69%
Blast2go	structural constituent of ribosome	GO:0003735	Molecular Function	69%
Blast2go	ribosome	GO:0005840	Cellular Component	69%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABZ3

Fln msg: Distance to subject end: 201 aas, your sequence is shorter than subject: 121 - 323

Fln protein: MGLRGFRVLRNSSQLDYSKLFRSNRGVSCVESSLLSSTSFEHGETSIYGPLGFCSAKYTTTTTNGMWSFISARGLCSFAPTPQTDIVMSPSELLAAQASYAAQRVQGKLQDLALRVTNMCN

Protein Length: 122

Fln nts: ATGGGGAGGGTTCAACGAGATA_-_ATGGGGCTCAGGGGTTTTAGGGTTCTCAGAAATTCTTCGCAGCTCGATTATTCAAAATTGTTTCGATCGAACCGTGGTGTTTCCTGTGTGGAGTCTTCACTGTTATCCTCAACTTCTTTCGAGCATGGAGAAACGTCCATTTACGGACCTCTTGGATTCTGCTCTGCGAAATACACTACAACAACAACGAATGGTATGTGGTCCTTCATTTCTGCTCGAGGACTTTGCTCATTTGCCCCAACACCGCAGACAGACATTGTAATGTCACCATCAGAGTTATTGGCAGCACAGGCATCATATGCTGCACAAAGGGTTCAAGGCAAGCTTCAGGACTTAGCACTAAGAGTGACAAATATGTGTAATGA

Fln Alignment:

biogeco2_mira_c11440___MGLRGFRVLRNSSQLDYSKLFRSNRGVSCVEXXXXXXXXFEHGETSIYGPLGFCSAKYTTTTTNGMWSFISARGLCSFAPTPQTDIVMSPSELLAAQASYAAQRVQGKLQDLALRVTNMCN
D5ABZ3__________________MGFRGFRVLRNSSQFCYSNFFQSSRGVSCAQSSPFLSASLEHGESSIYGPQGFCSSKSAATSGNGMWSLISARGLCSFVPTPQTDLVISPSELLAAQAAYAAQRVQGKFEDLTLRVTNMRN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain