SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene14265

Length: 460 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene14265
TGGATGAGGCTTTCTTAGCATTGGCAAAAGATCAGTCACTAGGAGTTGACATCAGAGCTCAAGCCTCGATTTGTGCACAGTACAAGATTGCTGTCTTACTACTTCAGGAAATTTCTCGCCTACAGCGTGTGCAAGGGCCTAGTGCTGTCAGTGCGAAAGAGGAAATGGCCAGACTTTCTCGCCATCTTGGCTCTTTGCCTCTTCTTGCAAAGCACCGAATAAGTTGCATCCGAACTGCTATTAAAAGGAATATGGATGTGCAGAACTATGCATTTGCAAAATCTGACCTTGATCTTCTCCTCTCAAAGGCCCCTCCTAACAAACAGGATGAACTCAGAAGCTTGATCAATGTATGCACACAAAGAGGTCTCACTGATAAATCCATTGATCCGACAGAGGATGCCTCACAGTTTTGTTCTGCAACACTTGGCCGCTTGCCAACAATAGGACATGATGTCTG

Ace file of the UniGene biog2_v2.0_unigene14265 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene29866	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	p450 domain containing protein	-	-	6.0e-06	26%
FL-Next	tr=Putative uncharacterized protein; Zea mays (Maize).	-	-	0.0	80%
Blast2go	vascular protein	-	-	0.0	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	85%

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: C0P6I7

Fln msg: Distance to subject end: 41 aas, your sequence is shorter than subject: 152 - 212

Fln protein: DEAFLALAKDQSLGVDIRAQASICAQYKIAVLLLQEISRLQRVQGPSAVSAKEEMARLSRHLGSLPLLAKHRISCIRTAIKRNMDVQNYAFAKSDLDLLLSKAPPNKQDELRSLINVCTQRGLTDKSIDPTEDASQFCSATLGRLPTIGHDV

Protein Length: 153

Fln nts: TGGATGAGGCTTTCTTAGCATTGGCAAAAGATCAGTCACTAGGAGTTGACATCAGAGCTCAAGCCTCGATTTGTGCACAGTACAAGATTGCTGTCTTACTACTTCAGGAAATTTCTCGCCTACAGCGTGTGCAAGGGCCTAGTGCTGTCAGTGCGAAAGAGGAAATGGCCAGACTTTCTCGCCATCTTGGCTCTTTGCCTCTTCTTGCAAAGCACCGAATAAGTTGCATCCGAACTGCTATTAAAAGGAATATGGATGTGCAGAACTATGCATTTGCAAAATCTGACCTTGATCTTCTCCTCTCAAAGGCCCCTCCTAACAAACAGGATGAACTCAGAAGCTTGATCAATGTATGCACACAAAGAGGTCTCACTGATAAATCCATTGATCCGACAGAGGATGCCTCACAGTTTTGTTCTGCAACACTTGGCCGCTTGCCAACAATAGGACATGATGTCTG

Fln Alignment:

biogeco2_mira_c11418___DEAFLALAKDQSLGVDIRAQASICAQYKIAVLLLQEISRLQRVQGPSAVSAKEEMARLSRHLGSLPLLAKHRISCIRTAIKRNMDVQNYAFAKSDLDLLLSKAPPNKQDELRSLINVCTQRGLTDKSIDPTEDASQFCSATLGRLPTIGHDV
C0P6I7__________________DEAFLALAKDQSREADIKAQATICAQYKIAVALLQEIARLQRVQGAGALSAKEEMARLSRHLASLPIQAKHRINCIRTAIKRNMEVQNYAYAKQMLDLLYSKAPPTKQDELKSLIDMCVQRGLTNKSIDPFEDPSQFCSVTLSRLSTIGHDV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain