SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene14255

Length: 311 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene14255
AAACCCCAGGGCCGCGAGACCACTGTTTTGGCTGCATTTCTGCTCTCCTCTAACAAAAATGGATTATGGGTTGTTGCCTTAGGTACTGGGACTAAATGCCTTGGACGATTGCGCATGAGTGCAAATGGAGATGTTGTCAATGATTCACATGCTGAAGTCATTGCGAGAAGAGCTCTTATCAGGTTTTCTACTCAGAGATTGAGAATCTTAATAAGATTTATCTGAACAGTTTGGGATATGAAGAACATGCTAGTCAAGGCGCTTCAAATTCTATTTTGATCTGGCTTCCAGGGATGGCAAGTATCTTAGGT

Ace file of the UniGene biog2_v2.0_unigene14255 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene28999	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	adenosine-deaminase family/editase family protein [Arabidopsis thaliana]	-	-	3.0e-35	48%
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	0.0	64%
Blast2go	trna-specific adenosine deaminase 1-like	-	-	0.0	63%

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein translocase complex, SecE/Sec61-gamma subunit	IPR001901	-	0.0	-
Sma3	Adenosine deaminase/editase	IPR002466	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9RDP5

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 314 aas, your sequence is shorter than subject: 75 - 443

Fln protein: KPQGRETTVLAAFLLSSNKNGLWVVALGTGTKCLGRLRMSANGDVVNDSHAEVIARRALIRFSTQRLRILIRFI*

Protein Length: 76

Fln nts: AAACCCCAGGGCCGCGAGACCACTGTTTTGGCTGCATTTCTGCTCTCCTCTAACAAAAATGGATTATGGGTTGTTGCCTTAGGTACTGGGACTAAATGCCTTGGACGATTGCGCATGAGTGCAAATGGAGATGTTGTCAATGATTCACATGCTGAAGTCATTGCGAGAAGAGCTCTTATCAGGTTTTCTACTCAGAGATTGAGAATCTTAATAAGATTTATCTGAACAGTTTGGGATATGAAGAACATGCTAGTCAAGGCGCTTCAAATTCTATTTTGATCTGGCTTCCAGGGATGGCAAGTATCTTAGGT

Fln Alignment:

biogeco2_mira_c11407___KPQGRETTVLAAFLLSSNKNGLWVVALGTGTKCLGRLRMSANGDVVNDSHAEVIARRALIRFSTQRLRIL
B9RDP5__________________KPQGREVTVLSSFLISSPSQELEVISLGTGTKCLGRSQLSPRGDIVNDSHAEIIARRALMRFFYSEIRRL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain