SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene14231

Length: 303 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene14231
ATGGGGAATCTTGTAACATACACTCATTCCAAAACTCATGAAATTTGAATTTCAGAGCAAATTATAGCTGATTACATAGATATTCACAGGTAGCCTCATTGATAATCTGAGAGCTATTCTGGAAATCTACAATTATTCTGTTTGAGTTTGTTTTGTATCAAGCTGATGGACAATGAACGGGAGGCATCATGGAGTATGGTGGGAAGAAATGGCATGCAGTTTGTCTTGAACGGATCACCATTCTATGTGAATGGCTTTAATGCATACTGGCTGATGGTCCTTGCCGTTGATCCTTCAGCCCGA

Ace file of the UniGene biog2_v2.0_unigene14231 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene239	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Hydrolase, hydrolyzing O-glycosyl compounds, putative n=1 Tax=Ricinus communis RepID=B9SRU0_RICCO	-	-	58%
FL-Next	sp=Mannan endo-1,4-beta-mannosidase 6; Arabidopsis thaliana (Mouse-ear cress).	-	-	68%
Blast2go	mannan endo- -beta-mannosidase 6-like	-	-	72%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Glycosylases, Glycosidases, i.e. enzymes hydrolyzing O- and S-glycosyl compounds.	EC:3.2.1.-	-	0.0	72%

Source	KEGGs	Term	Identity
Blast2go	Ascorbate and aldarate metabolism	00053	72%
Blast2go	Ubiquinone and other terpenoid-quinone biosynthesis	00130	72%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	72%
Blast2go	Glycosaminoglycan degradation	00531	72%
Blast2go	Metabolic pathways	01100	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	0.0	72%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	Glycoside hydrolase, family 5	IPR001547	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: sp_plants

Fln subject: Q9LZV3

Fln msg: Distance to subject end: 366 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 46 - 448

Fln protein: MDNEREASWSMVGRNGMQFVLNGSPFYVNGFNAYWLMVLAVDPSAR

Protein Length: 47

Fln nts: ATGGGGAATCTTGTAACATACACTCATTCCAAAACTCATGAAATTTGAATTTCAGAGCAAATTATAGCTGATTACATAGATATTCACAGGTAGCCTCATTGATAATCTGAGAGCTATTCTGGAAATCTACAATTATTCTGTTTGAGTTTGTTTTGTATCAAGCTG_-_ATGGACAATGAACGGGAGGCATCATGGAGTATGGTGGGAAGAAATGGCATGCAGTTTGTCTTGAACGGATCACCATTCTATGTGAATGGCTTTAATGCATACTGGCTGATGGTCCTTGCCGTTGATCCTTCAGCCCGA

Fln Alignment:

biogeco2_mira_c11380___EASWSMVGRNGMQFVLNGSPFYVNGFNAYWLMVLAVDPSAR
Q9LZV3__________________EEQWEMVQRKGMQFTLNGQPFYVNGFNTYWMMTLAADNSTR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain