SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene14219

Length: 448 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene14219
TGGTGGTCCATGGGGTGGATCTGGAATTGCACACAAGCTGGGAGACAGTCATCATCCTTCTCATTTCACTCTGACATCCGGTGATTTTCCAATTCTTGGGTCTGATAAGAATCCGAATTTGCGACCACAGCAAGGAAATGCTTCTACCATACGGTCAATGCCAAGTTCTGAAGTCTTGGCACTGAAGGACAGGCCGTGTGTTTCTCCACCTGATTGGTCTGATGATGTGTCCACGGGTAGTACTCCAATGGGCCAGGATAGAGGAACTGCAGAAACTTGGAAAAGAGAGAGTGCTTCGTATCCTCGGGAAATTCCAAGATCAGATGAAGGTCAACCACAGAGGGAAGGTTTAAACAGGCAACCATTTGTTAGTTCTGATTCGTGGCATTGCGATGATGGGCATACAGCCTCAATGACCTCAAATATTTCAGAAGATGAAGTGGCACAG

Ace file of the UniGene biog2_v2.0_unigene14219 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene927	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	BAT2_N domain containing protein	-	-	4.0e-14	28%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	31%

Source	InterPros	Term	Type	e value	Identity
Sma3	BAT2, N-terminal	IPR009738	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9TSG5

Fln msg: Distance to subject end: 1227 aas, your sequence is shorter than subject: 149 - 2099

Fln protein: GGPWGGSGIAHKLGDSHHPSHFTLTSGDFPILGSDKNPNLRPQQGNASTIRSMPSSEVLALKDRPCVSPPDWSDDVSTGSTPMGQDRGTAETWKRESASYPREIPRSDEGQPQREGLNRQPFVSSDSWHCDDGHTASMTSNISEDEVAQ

Protein Length: 150

Fln nts: TGGTGGTCCATGGGGTGGATCTGGAATTGCACACAAGCTGGGAGACAGTCATCATCCTTCTCATTTCACTCTGACATCCGGTGATTTTCCAATTCTTGGGTCTGATAAGAATCCGAATTTGCGACCACAGCAAGGAAATGCTTCTACCATACGGTCAATGCCAAGTTCTGAAGTCTTGGCACTGAAGGACAGGCCGTGTGTTTCTCCACCTGATTGGTCTGATGATGTGTCCACGGGTAGTACTCCAATGGGCCAGGATAGAGGAACTGCAGAAACTTGGAAAAGAGAGAGTGCTTCGTATCCTCGGGAAATTCCAAGATCAGATGAAGGTCAACCACAGAGGGAAGGTTTAAACAGGCAACCATTTGTTAGTTCTGATTCGTGGCATTGCGATGATGGGCATACAGCCTCAATGACCTCAAATATTTCAGAAGATGAAGTGGCACAG

Fln Alignment:

biogeco2_mira_c11364___DSHHPSHFTLTSGDFPILGSDKNPNLRPQQGNASTIRS--MPSSEVLALKDRPCVSPPDWSDDVSTGSTPMG---QDRGTAETWKRESASYPREIPRSD--------EGQPQREGLNRQPFVSSDSWHCDDG
A9TSG5__________________EGHQASRFQLTRTDFPTLGSEKNPDLRPQQSNSGAERGPLVDAKGAHGEERRAPTPPPGPHEEVPARPRSAGYGHPERGGPENWRREAPAFQGPVPRAEGNWHWDGPSGRPAYGGQGPPP----DSWRREGG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain