SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene14194

Length: 516 nt

UniGene Fasta

>biog2_v2.0_unigene14194
GTTGATGGTACACTGAACAAGCTGACCACACTTCGAGAATATATAGATGACACAGAAGACTACATCAATATTCAGCTTGACAATCATCGTAATCAACTTATTCAGTTAGAGTTGTTACTGAGTTCAGCAACAGTTGCAATCTCTATTTACTCCTTGGTAGCTGGAATTTTTGGATGAATATTCCATATCCATGGAATAACAATCATGCATATTTATTCAAATGGGTGGTTGTGCTTACGGGACTATTTTGTATTGGAATCTTCTCAATAATCATGGCTTATGCTCGTTACAAAGGTCTGATTGGAACCTGAAATAACGGACTTTGAACAATAGCCTGTACAAAGATTTCCTTTGAAAGAACATAGGTGATTCTTAAATATCATCTTCTGCCCTGTCTAACACATAGTAGCTGAACTAAAATCAGTGACATTGCATGCATCAGCTCAAGGTCACGATGCCATTATTGAATTAAGTGTCATTAGACTGAGTGTTCTTTACCAAGATGCAGGGTTATTG

Ace file of the UniGene biog2_v2.0_unigene14194

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7784	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Magnesium transporter MRS2-I n=6 Tax=Poaceae RepID=MRS2I_ORYSJ	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	70%
Blast2go	magnesium transporter	-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	86%
Blast2go	magnesium ion transport	GO:0015693	Biological Process	86%
Blast2go	magnesium ion transmembrane transporter activity	GO:0015095	Molecular Function	86%
Blast2go	membrane	GO:0016020	Cellular Component	86%

Source	InterPros	Term	Type	e value	Identity
Sma3	Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB	IPR002523	-	0.0	-
Sma3	Peptidase S1/S6, chymotrypsin/Hap, active site	IPR018114	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LMA9

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 43 aas, putative chimeric sequence, your sequence is shorter than subject: 59 - 467

Fln protein: VDGTLNKLTTLREYIDDTEDYINIQLDNHRNQLIQLELLLSSATVAISIYSLVAGIFG*

Protein Length: 60

Fln nts: GTTGATGGTACACTGAACAAGCTGACCACACTTCGAGAATATATAGATGACACAGAAGACTACATCAATATTCAGCTTGACAATCATCGTAATCAACTTATTCAGTTAGAGTTGTTACTGAGTTCAGCAACAGTTGCAATCTCTATTTACTCCTTGGTAGCTGGAATTTTTGGATGA___ATATTCCATATCCATGGAATAACAATCATGCATATTTATTCAAATGGGTGGTTGTGCTTACGGGACTATTTTGTATTGGAATCTTCTCAATAATCATGGCTTATGCTCGTTACAAAGGTCTGATTGGAACCTGAAATAACGGACTTTGAACAATAGCCTGTACAAAGATTTCCTTTGAAAGAACATAGGTGATTCTTAAATATCATCTTCTGCCCTGTCTAACACATAGTAGCTGAACTAAAATCAGTGACATTGCATGCATCAGCTCAAGGTCACGATGCCATTATTGAATTAAGTGTCATTAGACTGAGTGTTCTTTACCAAGATGCAGGGTTATTG

Fln Alignment:

biogeco2_mira_c11330___VDGTLNKLTTLREYIDDTEDYINIQLDNHRNQLIQLELLLSSATVAISIYSLVA
B8LMA9__________________IDSTLNKLTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain