SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene14193

Length: 461 nt

UniGene Fasta

>biog2_v2.0_unigene14193
ATGGGGGGATCAAGAACGGTCGAAACTCTATCTTCTTGTTGGATCAGCGAACCCTCGAAACTCGATTGTGAGAAGGCGTTGGATCCCGTGCCACAAGACCGACATGGCTTGCGTTGCAGAATGTCGTCGTCCTCTACCTCTGATCGATGAAAATCCCAGGAAGCGCAGAAAGCTAACGTCCTCGTGGGATGTCCTCCCTTGTCATATGCAGGGTTTGGAGAAGTCATCACAAGAAATATGCGACAGATTGCCAAAGTCAAGTGCAATAAAGTTGATTGATTTTGGAAGTACCACTTTCGAAGGAGAAGATCATACATCAGTGATCTCTACAAGGCATTATCGAGCTCCTGAAGTTATATTGGTAAGCTTTGAAAGACGTCCCAGTAGGATCTACCACTTGAGTGACATTCCAATGTTCAAATGAGCTATTAAATAGCACATATATCCAATTGCATTGTTAA

Ace file of the UniGene biog2_v2.0_unigene14193

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22958	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	protein kinase [Arabidopsis thaliana]	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	54%
Blast2go	serine threonine-protein kinase afc1	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ferrochelatase.	EC:4.99.1.1	-	0.0	81%

Source	KEGGs	Term	Identity
Blast2go	Porphyrin and chlorophyll metabolism	00860	81%
Blast2go	Metabolic pathways	01100	81%
Blast2go	Biosynthesis of secondary metabolites	01110	81%

Source	GOs	Term	Type	Identity
Blast2go	response to oxidative stress	GO:0006979	Biological Process	81%
Blast2go	heme biosynthetic process	GO:0006783	Biological Process	81%
Blast2go	ferrochelatase activity	GO:0004325	Molecular Function	81%
Blast2go	protein binding	GO:0005515	Molecular Function	81%
Blast2go	mitochondrion	GO:0005739	Cellular Component	81%
Blast2go	chloroplast	GO:0009507	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LL66

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 112 aas, your sequence is shorter than subject: 141 - 459

Fln protein: WGDQERSKLYLLVGSANPRNSIVRRRWIPCHKTDMACVAECRRPLPLIDENPRKRRKLTSSWDVLPCHMQGLEKSSQEICDRLPKSSAIKLIDFGSTTFEGEDHTSVISTRHYRAPEVILVSFERRPSRIYHLSDIPMFK*

Protein Length: 142

Fln nts: ATGGGGGGATCAAGAACGGTCGAAACTCTATCTTCTTGTTGGATCAGCGAACCCTCGAAACTCGATTGTGAGAAGGCGTTGGATCCCGTGCCACAAGACCGACATGGCTTGCGTTGCAGAATGTCGTCGTCCTCTACCTCTGATCGATGAAAATCCCAGGAAGCGCAGAAAGCTAACGTCCTCGTGGGATGTCCTCCCTTGTCATATGCAGGGTTTGGAGAAGTCATCACAAGAAATATGCGACAGATTGCCAAAGTCAAGTGCAATAAAGTTGATTGATTTTGGAAGTACCACTTTCGAAGGAGAAGATCATACATCAGTGATCTCTACAAGGCATTATCGAGCTCCTGAAGTTATATTGGTAAGCTTTGAAAGACGTCCCAGTAGGATCTACCACTTGAGTGACATTCCAATGTTCAAATGAGCTATTAAATAGCACATATATCCAATTGCATTGTTAA

Fln Alignment:

biogeco2_mira_c11329___DENPRKRRKLTSSWDVLPCHMQGLEKSSQE--ICDRLPKSSAIKLIDFGSTTFEGEDHTSVISTRHYRAPEVIL
B8LL66__________________DLKPENILFASSEYKKVPYYKNGLKRLSQDGTCYMRLPKSTAIKLIDFGSATFEDQNHSSIISTRHYRAPEVIL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain