SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene14177

Length: 322 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene14177
TCTTGGGCTAGGGAAAGAAAACCTAAATAGAAGACGGCAGTGTTTGTTCGGTTTAGGTTTCTCTGAAAATCAAATTTCTGATTTATTTAGGAAGCAGCCGTCGATTCTCCGCATGAGAGAGGAAAAACTGAAGTTTGCTGTGGCTTTTATGGTGAACATCGTGGGTCTTCCATTGGCTGATCTTGTTAAGAATCCTAGATTGATCGGATTCAGCGTGGAGACAAGAATAATTCCTAGGTATAGAGTAATGGAGGCATTGAAGTCTATGCATGTGCAAGCGCCAAGGAAGAAAAGGGCTAGTTATGTGACGATTTTTGCTTTG

Ace file of the UniGene biog2_v2.0_unigene14177 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene56181	1/2
SustainPine v2.0	sp_v2.0_unigene62735	1/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Mitochondrial transcription termination factor family protein [Arabidopsis thaliana] dbj\|BAA97307.1\| unnamed protein product [Arabidopsis thaliana] gb\|AED97974.1\| Mitochondrial transcription termination factor family protein [Arabidopsis thaliana]	-	-	2.0e-09	29%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%
Blast2go	protein	-	-	7.05121e-36	63%

Source	InterPros	Term	Type	e value	Identity
Sma3	Mitochodrial transcription termination factor-related	IPR003690	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LMF9

Fln msg: Distance to subject end: 35 aas, your sequence is shorter than subject: 107 - 174

Fln protein: LGLGKENLNRRRQCLFGLGFSENQISDLFRKQPSILRMREEKLKFAVAFMVNIVGLPLADLVKNPRLIGFSVETRIIPRYRVMEALKSMHVQAPRKKRASYVTIFAL

Protein Length: 108

Fln nts: TCTTGGGCTAGGGAAAGAAAACCTAAATAGAAGACGGCAGTGTTTGTTCGGTTTAGGTTTCTCTGAAAATCAAATTTCTGATTTATTTAGGAAGCAGCCGTCGATTCTCCGCATGAGAGAGGAAAAACTGAAGTTTGCTGTGGCTTTTATGGTGAACATCGTGGGTCTTCCATTGGCTGATCTTGTTAAGAATCCTAGATTGATCGGATTCAGCGTGGAGACAAGAATAATTCCTAGGTATAGAGTAATGGAGGCATTGAAGTCTATGCATGTGCAAGCGCCAAGGAAGAAAAGGGCTAGTTATGTGACGATTTTTGCTTTG

Fln Alignment:

biogeco2_mira_c11309___LGLGKENLNRRRQCLFGLGFSENQISDLFRKQPSILRMREEKLKFAVAFMVNIVGLPLADLVKNPRLIGFSVETRIIPRYRVMEALKSMHVQAP------RKKRASYVTIFAL
B8LMF9__________________LGLGQEKLDRRRQCLRSLGFSENQILDIWRKKPSSLGITEEKIKRNVDFVVKTAGIPLADLVKYPNLFEYSVETRMIPRYRVMEALKSIQVQAQAPTKKGKKEGLSFVQIFIM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain