SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene14129

Length: 407 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene14129
GTCATCAGTAGCAAGACGTTTGGATCATAAAGCTGTCCCCACCAAATGGTACAACCTTGAAAAGCATTCTGTGGTTGATGGAGAGAAGAAGAAACTAAGTTTGCAAGCAAGATTCATCTCAGAATCTGTCTTGATGGTGGGTATCATGTCCTTGATGAATCTACACATTACAGCAGCGATCTGAGGCCCACCGCCAAACAGTTGTGGAAGCCCTCCATTGGTGTCCTTGAAGTCGGTATCCTGAGTGCCCAGGGCTTGCTTCCTATGAAGCCTAAAGATGGCAGAGGAACTACTGATGCTTACTGTGTTGCCAAATATGGACAGAAATGGGTTAGAACAAGGACAGTTATAGATAACTTCAATCCCAGATGGAATGAGCAGTACACCTGGGAAGTTTTTGACCCTTC

Ace file of the UniGene biog2_v2.0_unigene14129 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene741	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	calcium-dependent lipid-binding domain-containing plant phosphoribosyltransferase-like protein [Arabidopsis thaliana] emb\|CAB67616.1\| anthranilate phosphoribosyltransferase-like protein [Arabidopsis thaliana] gb\|AEE79712.1\| calcium-dependent lipid-binding	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	c2 domain-containing protein	-	-	88%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell wall	GO:0005618	Cellular Component	0.0	88%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	0.0	88%

Source	InterPros	Term	Type	Identity
Sma3	C2 calcium-dependent membrane targeting	IPR000008	-	-
Sma3	Glutathione peroxidase	IPR000889	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Molybdopterin oxidoreductase, prokaryotic, conserved site	IPR006655	-	-
Sma3	Protein of unknown function DUF1118	IPR009500	-	-
Sma3		IPR012335	-	-
Sma3	Phosphoribosyltransferase C-terminal	IPR013583	-	-
Sma3	C2 membrane targeting protein	IPR018029	-	-
Sma3	Hemopexin/matrixin, conserved site	IPR018486	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LL63

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 352 aas, your sequence is shorter than subject: 135 - 758

Fln protein: VISSKTFGS*SCPHQMVQP*KAFCG*WREEETKFASKIHLRICLDGGYHVLDESTHYSSDLRPTAKQLWKPSIGVLEVGILSAQGLLPMKPKDGRGTTDAYCVAKYGQKWVRTRTVIDNFNPRWNEQYTWEVFDP

Protein Length: 136

Fln nts: GTCATCAGTAGCAAGACGTTTGGATCATAAAGCTGTCCCCACCAAATGGTACAACCTTGAAAAGCATTCTGTGGTTGATGGAGAGAAGAAGAAACTAAGTTTGCAAGCAAGATTCATCTCAGAATCTGTCTTGATGGTGGGTATCATGTCCTTGATGAATCTACACATTACAGCAGCGATCTGAGGCCCACCGCCAAACAGTTGTGGAAGCCCTCCATTGGTGTCCTTGAAGTCGGTATCCTGAGTGCCCAGGGCTTGCTTCCTATGAAGCCTAAAGATGGCAGAGGAACTACTGATGCTTACTGTGTTGCCAAATATGGACAGAAATGGGTTAGAACAAGGACAGTTATAGATAACTTCAATCCCAGATGGAATGAGCAGTACACCTGGGAAGTTTTTGACCCTTC

Fln Alignment:

biogeco2_mira_c11248___REEETKFASKIHLRICLDGGYHVLDESTHYSSDLRPTAKQLWKPSIGVLEVGILSAQGLLPMKPKDGRGTTDAYCVAKYGQKWVRTRTVIDNFNPRWNEQYTWEVFDP
B8LL63__________________KKKEVKFASRIFLRLSLDGGYHVLDESTHYSSDLRPTHKHLWKSYIGILQVGILSAQNLLPMKTKDGRGTTDAYCVAKYGQKWVRTRTLIDTLNPKWNEQYTWEVYDP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain