SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene14028

Length: 304 nt

UniGene Fasta

>biog2_v2.0_unigene14028
TATACTTGTCAGTGTCAATGGTGAGCTTGTAACGCAATTCTTGAAGTTGGAGACGGTGCTGGATGATAATGTTGGAAAGAATATCGATTTAGAGGTTGAGAGGGGTGGTGATCCTGTGAAAGTCACTTTGCAAGTCCAGGACTTGCATTCTGTAACTCCAGATTACTTCTTGGAAGTCAGTGGTGGCGTTATTCATCCTCTATCGTACCAACAGGCTAGAAATTTCCGGTTTAATTGNGGTCTAGTATGTGTTGCGGAACCAGGGTATATGTTGTCAAGGGCAGGTGTTCCGCGGCATGCCATC

Ace file of the UniGene biog2_v2.0_unigene14028

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene28186	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	protease Do-like 7 [Arabidopsis thaliana] sp\|Q8RY22.1\|DEGP7_ARATH RecName: Full=Protease Do-like 7 gb\|AAL84951.1\| AT3g03380/T21P5_20 [Arabidopsis thaliana] gb\|AAO11643.1\| At3g03380/T21P5_20 [Arabidopsis thaliana] gb\|AEE73938.1\| protease Do-like 7 [Arabido	-	-	65%
FL-Next	sp=Protease Do-like 7; Arabidopsis thaliana (Mouse-ear cress).	-	-	71%
Blast2go	protein	-	-	74%

Source	GOs	Term	Type	Identity
Blast2go	photoinhibition	GO:0010205	Biological Process	74%
Blast2go	peptidase activity	GO:0008233	Molecular Function	74%
Blast2go	chloroplast	GO:0009507	Cellular Component	74%

Source	InterPros	Term	Type	e value	Identity
Sma3	PDZ domain	IPR001478	-	0.0	-
Sma3	Peptidase S1C, HrtA/DegP2/Q/S	IPR001940	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8RY22

Fln msg: Distance to subject end: 673 aas, your sequence is shorter than subject: 101 - 1097

Fln protein: ILVSVNGELVTQFLKLETVLDDNVGKNIDLEVERGGDPVKVTLQVQDLHSVTPDYFLEVSGGVIHPLSYQQARNFRFN*GLVCVAEPGYMLSRAGVPRHAI

Protein Length: 102

Fln nts: TATACTTGTCAGTGTCAATGGTGAGCTTGTAACGCAATTCTTGAAGTTGGAGACGGTGCTGGATGATAATGTTGGAAAGAATATCGATTTAGAGGTTGAGAGGGGTGGTGATCCTGTGAAAGTCACTTTGCAAGTCCAGGACTTGCATTCTGTAACTCCAGATTACTTCTTGGAAGTCAGTGGTGGCGTTATTCATCCTCTATCGTACCAACAGGCTAGAAATTTCCGGTTTAATTGaGGTCTAGTATGTGTTGCGGAACCAGGGTATATGTTGTCAAGGGCAGGTGTTCCGCGGCATGCCATC

Fln Alignment:

biogeco2_mira_c11119___ILVSVNGELVTQFLKLETVLDDNVGKNIDLEVERGGDPVKVTLQVQDLHSVTPDYFLEVSGGVIHPLSYQQARNFRFN*GLVCVAEPGYMLSRAGVPRHAI
Q8RY22__________________VLVRVNGTVLTQFLNLENLLDDGVGQILELEIERGGQPLSVSVSVQDLHSITPDHFLEVSGAVIHPLSYQQARNFRFPCGLAYVADPGYMLFRAGVPRHAI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain