SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene13993

Length: 396 nt

UniGene Fasta

>biog2_v2.0_unigene13993
CTTCGTAGGACAACTGGAATTTTTCTATGACCAGTCACCTGATGCTATGCGCAGTTTATGTAGTGCACTTTCTCTTCTTACTACAGCGTTGGGGAACTATTTGAGTAGCCTTATTGTTACAGTTGTTATGTATGCAACTACGAAAGGAGGGAATGTAGGATGGATACCTGATAATTTGAATGAAGGCCACCTGGATTACTACTTTTGGGTATTAGCCTCACTCAGCCTCTTGAATTTGCTTGTATATGTTTCTTGTGCCCATCGGTACAAGTACAAAAAGCCAGTTAAAATTCATAACATTGAACGGCCTGTGTTATGATGATACACTAGCTATTACGTAGAAATTGGCGGAGAACGCATTCAATACACTTCAATTGAATAATGGATTATGGTTGA

Ace file of the UniGene biog2_v2.0_unigene13993

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1642	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Peptide transporter n=1 Tax=Hakea actites RepID=A6YJX4_9MAGN	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	peptide transporter ptr2-like	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	tripeptide transport	GO:0042939	Biological Process	85%
Blast2go	dipeptide transport	GO:0042938	Biological Process	85%
Blast2go	dipeptide transporter activity	GO:0042936	Molecular Function	85%
Blast2go	high affinity oligopeptide transporter activity	GO:0015334	Molecular Function	85%
Blast2go	tripeptide transporter activity	GO:0042937	Molecular Function	85%
Blast2go	nitrate transmembrane transporter activity	GO:0015112	Molecular Function	85%
Blast2go	plant-type vacuole	GO:0000325	Cellular Component	85%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	85%
Blast2go	integral to membrane	GO:0016021	Cellular Component	85%

Source	InterPros	Term	Type	e value	Identity
Sma3	Oligopeptide transporter	IPR000109	-	0.0	-
Sma3	PTR2 family proton/oligopeptide symporter, conserved site	IPR018456	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVR2

Fln msg: your sequence is shorter than subject: 106 - 594

Fln protein: FVGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSLIVTVVMYATTKGGNVGWIPDNLNEGHLDYYFWVLASLSLLNLLVYVSCAHRYKYKKPVKIHNIERPVL*

Protein Length: 107

Fln nts: CTTCGTAGGACAACTGGAATTTTTCTATGACCAGTCACCTGATGCTATGCGCAGTTTATGTAGTGCACTTTCTCTTCTTACTACAGCGTTGGGGAACTATTTGAGTAGCCTTATTGTTACAGTTGTTATGTATGCAACTACGAAAGGAGGGAATGTAGGATGGATACCTGATAATTTGAATGAAGGCCACCTGGATTACTACTTTTGGGTATTAGCCTCACTCAGCCTCTTGAATTTGCTTGTATATGTTTCTTGTGCCCATCGGTACAAGTACAAAAAGCCAGTTAAAATTCATAACATTGAACGGCCTGTGTTATGA___TGATACACTAGCTATTACGTAGAAATTGGCGGAGAACGCATTCAATACACTTCAATTGAATAATGGATTATGGTTGA

Fln Alignment:

biogeco2_mira_c11084___FVGQLEFFYDQSPDAMRXXXXXXXXXXXXXGNYLSSLIVTVVMYATTKGGNVGWIPDNLNEGHLDYYFWXXXXXXXXXXXXXXXCAHRYKYKK
A9NVR2__________________FVGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSLIVTIVMFATTKGGNIGWIPDNLNEGHLDYYFWVLASLSVLNLLVYVSCAHRYKYKK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain